BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0122200 Os02g0122200|011-083-F09
         (66 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21340.1  | chr2:9132629-9136236 FORWARD LENGTH=560             86   4e-18
AT4G39030.1  | chr4:18185740-18188898 FORWARD LENGTH=544           75   7e-15

>AT2G21340.1 | chr2:9132629-9136236 FORWARD LENGTH=560
          Length = 559

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/48 (85%), Positives = 44/48 (91%)

Query: 2   SLGMKDSWGPLKALAAASVINGVGDLLLCSVCGYGIAGAAWATMVSQV 49
           SLGMKDSWGPLKALA AS INGVGD++LC+  GYGIAGAAWATMVSQV
Sbjct: 261 SLGMKDSWGPLKALAVASAINGVGDVVLCTFLGYGIAGAAWATMVSQV 308



>AT4G39030.1 | chr4:18185740-18188898 FORWARD LENGTH=544
          Length = 543

 Score = 75.1 bits (183), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 41/48 (85%)

Query: 2   SLGMKDSWGPLKALAAASVINGVGDLLLCSVCGYGIAGAAWATMVSQV 49
           SLGMK+SWGPLKALAAA++ING+GD +LC   G GIAGAAWAT  SQ+
Sbjct: 244 SLGMKNSWGPLKALAAATIINGLGDTILCLFLGQGIAGAAWATTASQI 291



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,354,789
Number of extensions: 39068
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 3
Length of query: 66
Length of database: 11,106,569
Length adjustment: 39
Effective length of query: 27
Effective length of database: 10,037,345
Effective search space: 271008315
Effective search space used: 271008315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)