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Os02g0114000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromodomain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.017) R2 : 0.133
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.299 (0.0357) R2dN8 : 0.172 R2N8 : 0.133
σ : 0.319
deviance : 46.82
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.97 0.244 13.2 0.725 0.063 0.612 0.432 -0.083 0.447 22.7 74 1457 -- --
26.97 0.242 13.2 0.717 0.063 0.607 0.428 -- 0.446 22.7 74 1455 -- --
27.6 0.245 13.2 0.701 0.0913 0.602 -- -0.0325 0.443 1.39 74 1409 -- --
27.6 0.245 13.2 0.7 0.0928 0.604 -- -- 0.443 1.37 74 1404 -- --
27.91 0.246 13.2 0.707 -- 0.613 -- -0.1 0.446 -- 74.11 1515 -- --
31.89 0.265 13.2 0.743 0.0698 -- 0.395 -- 0.381 22.6 -- -- -- --
32.46 0.267 13.2 0.726 0.0753 -- -- -- 0.379 0.529 -- -- -- --
27.92 0.246 13.2 0.697 -- 0.607 -- -- 0.444 -- 74 1514 -- --
39.13 0.291 13.2 -- 0.0626 0.65 -- -- 0.413 0.0609 84.01 1516 -- --
32.82 0.268 13.2 0.728 -- -- -- -- 0.38 -- -- -- -- --
46.35 0.318 13.2 -- 0.0867 -- -- -- 0.298 0.944 -- -- -- --
39.39 0.292 13.2 -- -- 0.67 -- -- 0.416 -- 83.88 1530 -- --
46.82 0.319 13.2 -- -- -- -- -- 0.299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.09 humidity 80.0 1440 > th dose independent rect. 11 1
2 26.13 humidity 80.0 1440 < th dose independent rect. 11 1
4 26.41 humidity 70.0 1440 > th dose dependent rect. 24 16
6 26.44 humidity 70.0 1440 > th dose dependent rect. 11 1
8 26.46 precipitation 0.1 14400 > th dose dependent rect. 17 1
11 26.50 humidity 80.0 1440 < th dose independent rect. 22 19
21 26.57 wind 9.0 14400 < th dose independent rect. 10 1
22 26.57 humidity 80.0 1440 < th dose independent rect. 10 4
24 26.58 humidity 80.0 1440 > th dose independent rect. 10 4
42 26.67 humidity 80.0 1440 > th dose independent rect. 23 18
62 26.75 humidity 70.0 1440 > th dose dependent rect. 10 4
65 26.75 humidity 90.0 720 > th dose dependent rect. 5 20
68 26.77 wind 9.0 14400 > th dose independent rect. 10 1
75 26.79 humidity 90.0 720 > th dose dependent rect. 7 18
118 26.88 humidity 70.0 1440 > th dose dependent rect. 9 21
188 27.01 precipitation 0.1 14400 > th dose dependent rect. 13 4
200 27.03 humidity 70.0 1440 > th dose dependent sin 3 NA
206 27.04 precipitation 0.1 14400 > th dose independent rect. 13 4
207 27.04 precipitation 0.1 14400 < th dose independent rect. 13 4
210 27.04 precipitation 0.1 14400 < th dose dependent rect. 13 4
227 27.07 humidity 80.0 1440 < th dose independent sin 2 NA
233 27.07 humidity 70.0 1440 > th dose dependent no NA NA
239 27.08 precipitation 0.1 14400 > th dose independent rect. 17 1
255 27.10 humidity 80.0 1440 > th dose independent sin 1 NA
288 27.12 humidity 70.0 1440 > th dose dependent rect. 13 23
302 27.14 humidity 90.0 720 > th dose independent rect. 5 20
321 27.16 precipitation 0.1 14400 < th dose independent rect. 17 1
325 27.16 precipitation 0.1 14400 < th dose dependent rect. 17 1
329 27.16 humidity 70.0 1440 > th dose dependent rect. 5 23
356 27.20 humidity 80.0 1440 < th dose independent rect. 9 23
398 27.23 temperature 20.0 1440 > th dose dependent rect. 1 1
399 27.23 wind 3.0 43200 < th dose dependent rect. 22 7
452 27.28 temperature 20.0 4320 > th dose independent rect. 20 3
465 27.29 humidity 80.0 1440 < th dose independent no NA NA
466 27.29 precipitation 0.1 14400 > th dose independent rect. 15 2
472 27.29 humidity 80.0 1440 < th dose independent rect. 6 23
474 27.29 wind 3.0 43200 < th dose dependent rect. 23 5
483 27.30 temperature 20.0 4320 < th dose independent rect. 20 3
487 27.30 humidity 80.0 1440 > th dose independent rect. 9 23
506 27.31 humidity 90.0 720 > th dose dependent rect. 18 7
525 27.33 humidity 80.0 1440 < th dose independent rect. 3 23
550 27.34 humidity 80.0 1440 < th dose independent rect. 1 23
552 27.34 humidity 80.0 1440 < th dose independent rect. 13 23
553 27.34 humidity 80.0 1440 < th dose independent rect. 16 23
555 27.34 humidity 90.0 720 > th dose dependent sin 16 NA
590 27.36 humidity 90.0 720 > th dose dependent sin 21 NA
641 27.39 precipitation 0.1 43200 > th dose dependent rect. 19 1
667 27.41 humidity 80.0 1440 > th dose independent no NA NA
683 27.41 humidity 80.0 14400 > th dose dependent rect. 13 1
715 27.43 humidity 80.0 14400 > th dose independent rect. 13 1
769 27.45 humidity 80.0 1440 > th dose independent rect. 13 23
785 27.46 wind 1.0 43200 < th dose independent rect. 5 2
819 27.48 wind 3.0 43200 < th dose dependent rect. 24 3
827 27.49 wind 1.0 43200 > th dose independent rect. 5 1
831 27.49 humidity 90.0 1440 > th dose independent rect. 19 6
832 27.49 humidity 90.0 1440 > th dose independent rect. 18 8
833 27.49 humidity 90.0 720 > th dose independent rect. 18 16
918 27.53 humidity 90.0 720 > th dose dependent rect. 20 1
931 27.54 humidity 90.0 1440 > th dose independent sin 14 NA
968 27.55 temperature 20.0 1440 > th dose dependent rect. 4 1
995 27.56 humidity 90.0 1440 > th dose independent rect. 13 21