BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0114000 Os02g0114000|015-012-A11
         (320 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46020.2  | chr2:18923304-18931769 FORWARD LENGTH=2194         179   2e-45

>AT2G46020.2 | chr2:18923304-18931769 FORWARD LENGTH=2194
          Length = 2193

 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 166/325 (51%), Gaps = 28/325 (8%)

Query: 1    SGTKMSDSMQRKCKNVINKLWRRIDKEGHQIIPNISSWWRRNENSSFKGLASSTLDLQKI 60
            +G +MS  +Q++CK VI+KL RRIDKEG QI+P +++ W+R +N    G  ++ L+L++I
Sbjct: 1892 AGARMSHIIQKRCKIVISKLQRRIDKEGQQIVPMLTNLWKRIQNGYAAGGVNNLLELREI 1951

Query: 61   EQRVDGFEYGGVNEFIADMQQMLKSVVQHFSYRHEVRVEAETLHNLFFNIMKIAFPDSDF 120
            + RV+  EY GV E  +D+Q ML+  +Q + + HEVR EA+ +HNLFF+++K++FPD+DF
Sbjct: 1952 DHRVERLEYAGVMELASDVQLMLRGAMQFYGFSHEVRSEAKKVHNLFFDLLKMSFPDTDF 2011

Query: 121  REAKGAMSFSNPXXXXXXXXXXXXXXXXXXXXRRSSTSEAEQHGSSTSRHNQHAPVGEVS 180
            REA+ A+SFS                      R+   +E E   SS  R  Q       +
Sbjct: 2012 REARNALSFSG-SAPTLVSTPTPRGAGISQGKRQKLVNEPETEPSSPQRSQQRE-----N 2065

Query: 181  GRAHTSKSEKDSRHSGPGSREQFTDSAGLFRHPTDMFIVKKKRDXXXXXXXXXXXXXXXX 240
             R      +K+++  G  S    TD + +  HP ++ I KKKR                 
Sbjct: 2066 SRIRVQIPQKETKLGGTTSH---TDESPILAHPGELVICKKKRKDREKSGPKTRTGGSSS 2122

Query: 241  XXXXNAGRMGPAPSPRGARTPFQ----RDPHPSQQSMHSAGWGAHSVQQSDRGGSSSPGI 296
                    +G     RG R+P      R+   +QQ      W       ++ G +     
Sbjct: 2123 PVSPPPAMIG-----RGLRSPVSGGVPRETRLAQQQR----WPNQPTHPNNSGAA----- 2168

Query: 297  GD-IQWAKPTKRSRTDSGKRRPSHM 320
            GD + WA P KR RTDSGKRRPSH+
Sbjct: 2169 GDSVGWANPVKRLRTDSGKRRPSHL 2193



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,241,525
Number of extensions: 234756
Number of successful extensions: 549
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,392,385
Effective search space: 1854717085
Effective search space used: 1854717085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)