FiT-DB / Search/ Help/ Sample detail

Os02g0109100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Diphosphomevalonate decarboxylase (EC 4.1.1.33) (Mevalonate pyrophosphate decarboxylase) (Mevalonate-5-diphosphate decarboxylase) (MDD).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0207) R2 : 0.0659
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.248 (0.0437) R2dN8 : 0.0851 R2N8 : 0.0659
σ : 0.391
deviance : 70.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.7 0.331 10.8 0.267 0.472 -0.474 -1.02 -0.342 0.215 5.08 75 1359 -- --
49.86 0.329 10.8 0.277 0.475 -0.484 -1.04 -- 0.216 5.03 75 1338 -- --
52.14 0.336 10.8 0.275 0.471 -0.494 -- -0.392 0.204 4.55 73.26 1307 -- --
52.35 0.337 10.8 0.299 0.484 -0.545 -- -- 0.224 4.33 74.84 1232 -- --
59.3 0.359 10.8 0.282 -- -0.62 -- 0.788 0.261 -- 83.75 366 -- --
56.02 0.351 10.8 0.202 0.436 -- -1.14 -- 0.256 5.26 -- -- -- --
59.19 0.36 10.8 0.2 0.429 -- -- -- 0.261 4.95 -- -- -- --
59.99 0.361 10.8 0.219 -- -0.575 -- -- 0.278 -- 100.5 325 -- --
54.63 0.344 10.8 -- 0.471 -0.485 -- -- 0.196 4.55 75.49 1306 -- --
68.86 0.388 10.8 0.215 -- -- -- -- 0.272 -- -- -- -- --
60.24 0.363 10.8 -- 0.432 -- -- -- 0.238 4.93 -- -- -- --
61.25 0.365 10.8 -- -- -0.574 -- -- 0.254 -- 131.3 328 -- --
70.08 0.391 10.8 -- -- -- -- -- 0.248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.60 humidity 70.0 720 > th dose independent rect. 17 13
4 47.42 humidity 70.0 720 > th dose independent rect. 18 3
11 48.09 humidity 70.0 720 > th dose independent rect. 17 6
12 48.21 atmosphere 1000.0 14400 < th dose independent rect. 4 1
13 48.33 atmosphere 1000.0 14400 > th dose independent rect. 4 1
22 48.62 atmosphere 1000.0 14400 < th dose independent rect. 4 8
24 48.63 atmosphere 1000.0 14400 > th dose independent rect. 4 8
27 48.65 atmosphere 1000.0 14400 < th dose independent rect. 11 1
33 48.67 atmosphere 1000.0 14400 > th dose independent rect. 11 1
41 48.69 humidity 80.0 43200 < th dose dependent rect. 4 1
92 48.83 humidity 70.0 720 > th dose independent sin 13 NA
167 49.01 humidity 70.0 720 < th dose independent rect. 17 17
218 49.23 atmosphere 1000.0 14400 < th dose independent sin 4 NA
228 49.24 temperature 15.0 14400 > th dose independent rect. 8 7
240 49.27 atmosphere 1000.0 14400 > th dose independent sin 4 NA
254 49.29 temperature 30.0 720 < th dose independent rect. 17 14
267 49.31 humidity 50.0 720 > th dose dependent rect. 19 2
280 49.34 temperature 15.0 14400 < th dose independent rect. 8 7
287 49.35 precipitation 0.1 1440 < th dose independent rect. 5 3
295 49.35 atmosphere 1000.0 14400 < th dose dependent rect. 11 1
296 49.35 precipitation 0.1 1440 < th dose dependent rect. 5 3
307 49.38 humidity 70.0 720 < th dose independent rect. 17 2
320 49.41 temperature 15.0 14400 < th dose dependent rect. 4 14
328 49.42 humidity 80.0 43200 < th dose dependent rect. 22 1
340 49.43 humidity 50.0 43200 < th dose dependent rect. 17 14
341 49.44 precipitation 0.1 14400 > th dose independent rect. 19 2
350 49.45 precipitation 0.1 14400 < th dose independent rect. 19 2
353 49.45 precipitation 0.1 14400 < th dose dependent rect. 19 2
354 49.45 humidity 50.0 43200 < th dose dependent rect. 17 3
359 49.45 temperature 15.0 14400 < th dose dependent rect. 3 18
383 49.48 temperature 15.0 14400 < th dose independent rect. 6 5
402 49.50 temperature 15.0 14400 < th dose dependent sin 1 NA
437 49.54 atmosphere 1000.0 14400 < th dose dependent rect. 14 1
453 49.56 precipitation 0.1 1440 > th dose dependent rect. 5 3
456 49.57 precipitation 0.1 14400 > th dose independent rect. 17 4
457 49.57 precipitation 0.1 14400 < th dose independent rect. 17 4
465 49.57 precipitation 0.1 14400 < th dose dependent rect. 17 4
469 49.58 wind 3.0 14400 > th dose independent rect. 3 1
476 49.59 wind 3.0 14400 < th dose independent rect. 3 1
486 49.60 precipitation 0.1 1440 > th dose independent rect. 5 3
488 49.60 humidity 70.0 1440 > th dose independent rect. 17 17
499 49.61 temperature 15.0 14400 < th dose dependent rect. 4 6
502 49.62 temperature 15.0 14400 < th dose independent rect. 21 1
509 49.62 humidity 60.0 1440 > th dose independent rect. 14 22
510 49.62 humidity 60.0 1440 < th dose independent rect. 14 22
533 49.65 temperature 15.0 720 > th dose independent rect. 9 6
554 49.66 temperature 15.0 14400 < th dose dependent rect. 5 3
557 49.66 humidity 80.0 1440 < th dose dependent rect. 7 13
564 49.67 humidity 70.0 1440 < th dose dependent rect. 15 21
583 49.69 humidity 90.0 14400 > th dose dependent rect. 21 1
584 49.69 precipitation 0.1 14400 > th dose dependent rect. 19 2
592 49.70 humidity 50.0 720 > th dose independent rect. 9 22
595 49.70 radiation 1.0 43200 < th dose dependent rect. 24 4
613 49.71 humidity 50.0 43200 < th dose dependent rect. 18 1
619 49.72 radiation 30.0 43200 < th dose independent rect. 11 1
620 49.72 temperature 15.0 14400 < th dose independent rect. 21 3
643 49.72 temperature 15.0 14400 < th dose dependent rect. 7 18
663 49.74 precipitation 0.1 14400 < th dose independent rect. 6 16
666 49.74 precipitation 0.1 4320 < th dose independent rect. 24 18
667 49.74 precipitation 0.1 14400 > th dose dependent rect. 17 4
671 49.74 precipitation 0.1 14400 < th dose dependent rect. 6 16
674 49.74 precipitation 0.1 4320 < th dose dependent rect. 24 18
682 49.75 precipitation 0.1 14400 > th dose independent rect. 6 16
687 49.75 radiation 40.0 43200 > th dose dependent rect. 10 2
700 49.76 temperature 15.0 14400 > th dose independent rect. 21 1
711 49.76 precipitation 0.1 4320 > th dose independent rect. 24 18
715 49.76 temperature 15.0 14400 < th dose dependent sin 18 NA
716 49.76 radiation 1.0 43200 < th dose dependent rect. 24 2
732 49.77 precipitation 0.1 14400 > th dose independent rect. 6 20
734 49.77 temperature 15.0 14400 < th dose dependent rect. 17 7
753 49.78 precipitation 0.1 14400 < th dose independent rect. 6 20
760 49.78 precipitation 0.1 14400 < th dose dependent rect. 6 20
764 49.79 precipitation 0.1 4320 < th dose independent rect. 1 20
777 49.79 precipitation 0.1 4320 < th dose dependent rect. 1 20
783 49.80 humidity 50.0 720 > th dose independent rect. 9 14
789 49.80 precipitation 0.1 4320 > th dose independent rect. 24 21
830 49.82 precipitation 0.1 14400 < th dose independent rect. 14 8
847 49.82 precipitation 0.1 14400 < th dose dependent rect. 14 8
867 49.83 precipitation 0.1 4320 < th dose independent rect. 3 15
872 49.83 humidity 70.0 1440 > th dose independent rect. 17 20
888 49.83 precipitation 0.1 4320 < th dose dependent rect. 3 15
893 49.84 temperature 30.0 720 < th dose independent rect. 17 6
896 49.84 precipitation 0.1 14400 > th dose independent rect. 14 8
897 49.84 precipitation 0.1 14400 > th dose independent rect. 15 11
908 49.84 humidity 80.0 1440 < th dose dependent sin 23 NA
910 49.84 temperature 15.0 14400 < th dose dependent rect. 20 3
914 49.84 precipitation 0.1 1440 > th dose dependent rect. 5 8
947 49.85 precipitation 0.1 4320 > th dose dependent rect. 24 21
954 49.86 precipitation 0.1 14400 < th dose independent rect. 15 11
961 49.86 humidity 60.0 1440 > th dose independent rect. 6 16
997 49.86 temperature 15.0 14400 < th dose dependent rect. 10 3
999 49.86 precipitation 0.1 14400 > th dose dependent rect. 17 9
1000 49.86 precipitation 0.1 14400 < th dose dependent rect. 15 11