BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0109100 Os02g0109100|011-070-H09
         (64 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54250.1  | chr3:20082468-20084688 REVERSE LENGTH=420          102   4e-23
AT2G38700.1  | chr2:16180918-16183785 REVERSE LENGTH=413          100   1e-22

>AT3G54250.1 | chr3:20082468-20084688 REVERSE LENGTH=420
          Length = 419

 Score =  102 bits (254), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/54 (79%), Positives = 50/54 (92%)

Query: 11  QTVVPERVLKMEEAIKSRNFESFARLTCADSNQFHAVCLDTSPPIFYMNDTSHR 64
           + VVP+R+L+MEEAIK+R+F SF +LTC DSNQFHAVCLDTSPPIFYMNDTSHR
Sbjct: 235 KEVVPKRILQMEEAIKNRDFASFTQLTCTDSNQFHAVCLDTSPPIFYMNDTSHR 288



>AT2G38700.1 | chr2:16180918-16183785 REVERSE LENGTH=413
          Length = 412

 Score =  100 bits (250), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 11  QTVVPERVLKMEEAIKSRNFESFARLTCADSNQFHAVCLDTSPPIFYMNDTSHR 64
           + VVP R+L+MEEAIK+R+F SF +LTC+DSNQFHAVC+DTSPPIFYMNDTSHR
Sbjct: 235 KEVVPVRILQMEEAIKNRDFTSFTKLTCSDSNQFHAVCMDTSPPIFYMNDTSHR 288



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,311,816
Number of extensions: 37090
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 64
Length of database: 11,106,569
Length adjustment: 37
Effective length of query: 27
Effective length of database: 10,092,177
Effective search space: 272488779
Effective search space used: 272488779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)