Os02g0105000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os02g0105000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.06 | 0.205 | 10.1 | -1.31 | 0.623 | -0.418 | 0.208 | 0.893 | -0.214 | 6.9 | 29.9 | 10 | -- | -- |
| 19.97 | 0.21 | 10.1 | -1.17 | 0.618 | -0.433 | 0.211 | -- | -0.186 | 6.88 | 27.39 | 15 | -- | -- |
| 19.16 | 0.204 | 10.1 | -1.31 | 0.622 | -0.402 | -- | 0.906 | -0.211 | 6.97 | 29.9 | 10 | -- | -- |
| 20.04 | 0.209 | 10.1 | -1.16 | 0.618 | -0.417 | -- | -- | -0.184 | 6.99 | 27.2 | 13 | -- | -- |
| 38.95 | 0.292 | 10.1 | -1.28 | -- | -0.262 | -- | 1.03 | -0.179 | -- | 29.9 | 10 | -- | -- |
| 22.55 | 0.223 | 10.1 | -1.06 | 0.597 | -- | -0.0237 | -- | -0.092 | 7.77 | -- | -- | -- | -- |
| 22.55 | 0.222 | 10.1 | -1.06 | 0.597 | -- | -- | -- | -0.092 | 7.76 | -- | -- | -- | -- |
| 38.64 | 0.291 | 10.1 | -1.15 | -- | -0.444 | -- | -- | -0.155 | -- | 24.1 | 20 | -- | -- |
| 51.68 | 0.335 | 10 | -- | 0.55 | 0.183 | -- | -- | 0.0479 | 8.11 | 49.85 | 337 | -- | -- |
| 41.82 | 0.302 | 10.1 | -1.05 | -- | -- | -- | -- | -0.0836 | -- | -- | -- | -- | -- |
| 52.09 | 0.338 | 10.1 | -- | 0.589 | -- | -- | -- | 0.0259 | 7.89 | -- | -- | -- | -- |
| 64.61 | 0.374 | 10.1 | -- | -- | 0.616 | -- | -- | 0.107 | -- | 53.19 | 561 | -- | -- |
| 70.97 | 0.393 | 10.1 | -- | -- | -- | -- | -- | 0.0331 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 15 |
| 19 | 18.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 45 | 18.63 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 52 | 18.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 55 | 18.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 58 | 18.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 81 | 18.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 87 | 18.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 91 | 18.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 100 | 18.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 101 | 18.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 116 | 18.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 18 |
| 127 | 18.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 128 | 18.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 164 | 18.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 223 | 18.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 224 | 18.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 256 | 18.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 278 | 18.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 302 | 18.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 311 | 18.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 313 | 19.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 385 | 19.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 386 | 19.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 397 | 19.06 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 415 | 19.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 424 | 19.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 443 | 19.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 458 | 19.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 509 | 19.14 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 510 | 19.14 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 519 | 19.15 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 550 | 19.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 552 | 19.18 | wind | 3 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 573 | 19.20 | temperature | 10 | 10 | > th | dose dependent | sin | 8 | NA |
| 604 | 19.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 611 | 19.23 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 627 | 19.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 628 | 19.24 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 630 | 19.24 | humidity | 90 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 653 | 19.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 692 | 19.28 | temperature | 30 | 10 | < th | dose dependent | sin | 8 | NA |
| 710 | 19.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 738 | 19.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 750 | 19.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 771 | 19.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 808 | 19.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 15 |
| 817 | 19.36 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 822 | 19.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 840 | 19.37 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 844 | 19.37 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 851 | 19.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 854 | 19.38 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 876 | 19.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 885 | 19.39 | wind | 9 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 897 | 19.40 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 946 | 19.42 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 948 | 19.42 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 16 |
| 995 | 19.44 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |