BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0105000 Os02g0105000|AK060064
(220 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27790.1 | chr2:11847335-11849285 REVERSE LENGTH=241 222 1e-58
AT5G27300.1 | chr5:9620810-9624990 FORWARD LENGTH=576 199 1e-51
>AT2G27790.1 | chr2:11847335-11849285 REVERSE LENGTH=241
Length = 240
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 152/240 (63%), Gaps = 29/240 (12%)
Query: 4 EPAAMRVYTVCDESKYLIVRNVPSLGCGDDLANLFATYGPVDECTPMDAEDCDPYTDVFF 63
E A+RVYTVCDES+Y+IVRNVP+LGCGDDL LF TYG V+EC PMDAEDC +TDV++
Sbjct: 7 ETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYW 66
Query: 64 IKFSQVSNARFAKRKLDESVFLGNRLQVSYAPQFESLLDTKEKLEVRRKEVLGRMKSSSG 123
IKF ++NARFAKRKLDES FLGNRLQ+SYAP++E++ DTK+KLE RRKEVL R+ +
Sbjct: 67 IKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLARL---NP 123
Query: 124 RPEGLSHHSPGQGSSAANSHRQMSSNKREYTKTLHASQFEDPRFTHVSSNKDYFPSESMN 183
+ E + A +SS +RE H + T VSS+++YF S SMN
Sbjct: 124 QKEKSTSQVTKLAGPALTQTDNVSSQRREMEYQFHRG---NAPVTRVSSDQEYFASSSMN 180
Query: 184 ATVNLVREKLDKIQSSSDNS---------------------SAIVAP--KKPRTDNRRRI 220
TV VREKL+KI+ S + S+ + P K+ R DNRRRI
Sbjct: 181 QTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDLKRTRVDNRRRI 240
>AT5G27300.1 | chr5:9620810-9624990 FORWARD LENGTH=576
Length = 575
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 137/215 (63%), Gaps = 16/215 (7%)
Query: 12 TVCDESKYLIVRNVPSLGCGDDLANLFATYGPVDECTPMDAEDCDPYTDVFFIKFSQVSN 71
+VCDES+Y+IVRNVP+LGCGDDL LF TYG V+EC PMDAEDC +TDV++IKF ++N
Sbjct: 371 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 430
Query: 72 ARFAKRKLDESVFLGNRLQVSYAPQFESLLDTKEKLEVRRKEVLGRMKSSSGRPEGLSHH 131
A RKLDES FLGNRLQ+SYAP++ES+ DTKEKLE RRKEVL R+ +
Sbjct: 431 A----RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLNPHKAKSTSQVTK 486
Query: 132 SPGQGSSAANSHRQMSSNKREYTKTLHASQFEDPRFTHVSSNKDYFPSESMNATVNLVRE 191
G + ++ S +RE H + T VSS ++YF S SMN V VRE
Sbjct: 487 LAGPALTQTDN---FSPRRREMDYQFHRG---NAPVTRVSSYQEYFASSSMNQMVKTVRE 540
Query: 192 KLDKIQSSSDNS----SAIVAP--KKPRTDNRRRI 220
KL+KI+ S + S+ P K+ R DNRRRI
Sbjct: 541 KLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 575
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,850,032
Number of extensions: 200268
Number of successful extensions: 737
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)