Os02g0103700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA).
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Os02g0103700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.27 | 0.413 | 12.4 | -0.0886 | 0.644 | 0.612 | 0.846 | 2.64 | 0.0722 | 18.5 | 4.506 | 114 | -- | -- |
| 87.41 | 0.435 | 12.4 | -0.0241 | 0.682 | 0.288 | 1.48 | -- | 0.111 | 16.7 | 20.03 | 127 | -- | -- |
| 78.88 | 0.414 | 12.4 | -0.0932 | 0.64 | 0.628 | -- | 2.65 | 0.0734 | 18.5 | 4.938 | 123 | -- | -- |
| 92.33 | 0.448 | 12.4 | -0.0556 | 0.624 | 0.469 | -- | -- | 0.0793 | 18.3 | 3.207 | 170 | -- | -- |
| 90.16 | 0.442 | 12.4 | -0.0403 | -- | 0.807 | -- | 2.55 | 0.0561 | -- | -3.27 | 408 | -- | -- |
| 88.42 | 0.441 | 12.4 | -0.0591 | 0.735 | -- | 1.67 | -- | 0.097 | 16.4 | -- | -- | -- | -- |
| 95.35 | 0.457 | 12.4 | -0.0459 | 0.762 | -- | -- | -- | 0.106 | 16.9 | -- | -- | -- | -- |
| 99.63 | 0.465 | 12.4 | -0.105 | -- | 0.876 | -- | -- | 0.0178 | -- | -3.712 | 516 | -- | -- |
| 92.41 | 0.448 | 12.4 | -- | 0.629 | 0.456 | -- | -- | 0.0874 | 18.2 | 3.611 | 170 | -- | -- |
| 125.92 | 0.524 | 12.4 | -0.074 | -- | -- | -- | -- | 0.0863 | -- | -- | -- | -- | -- |
| 95.4 | 0.457 | 12.4 | -- | 0.762 | -- | -- | -- | 0.111 | 16.9 | -- | -- | -- | -- |
| 99.92 | 0.466 | 12.4 | -- | -- | 0.874 | -- | -- | 0.0297 | -- | -7.296 | 516 | -- | -- |
| 126.07 | 0.524 | 12.4 | -- | -- | -- | -- | -- | 0.0945 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.68 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 37 | 77.74 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 215 | 78.20 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 229 | 78.26 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 277 | 78.40 | radiation | 40 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 279 | 78.41 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 372 | 78.49 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 22 |
| 427 | 78.65 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 430 | 78.74 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 431 | 78.75 | radiation | 40 | 90 | < th | dose independent | sin | 6 | NA |
| 443 | 78.88 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 447 | 78.90 | radiation | 40 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 451 | 78.93 | radiation | 40 | 10 | < th | dose independent | rect. | 11 | 23 |
| 576 | 78.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 577 | 78.96 | radiation | 40 | 10 | < th | dose independent | rect. | 21 | 23 |
| 595 | 78.99 | radiation | 40 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 596 | 79.00 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 23 |
| 600 | 79.01 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 616 | 79.03 | radiation | 40 | 10 | < th | dose independent | rect. | 23 | 23 |
| 622 | 79.07 | radiation | 40 | 10 | < th | dose independent | rect. | 9 | 23 |
| 626 | 79.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 627 | 79.12 | radiation | 40 | 10 | < th | dose independent | sin | 17 | NA |
| 696 | 79.20 | radiation | 40 | 10 | < th | dose independent | rect. | 13 | 23 |
| 721 | 79.26 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 747 | 79.36 | radiation | 40 | 10 | < th | dose independent | no | NA | NA |
| 769 | 79.37 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 13 |
| 791 | 79.38 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 795 | 79.39 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 810 | 79.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 811 | 79.40 | radiation | 40 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 833 | 79.45 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 834 | 79.46 | radiation | 40 | 10 | < th | dose independent | rect. | 15 | 23 |
| 835 | 79.46 | radiation | 40 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 837 | 79.47 | radiation | 40 | 10 | < th | dose independent | rect. | 7 | 23 |
| 841 | 79.50 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 927 | 79.53 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 935 | 79.57 | radiation | 1 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 940 | 79.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 962 | 79.62 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |