BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0103700 Os02g0103700|AK102186
(192 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33140.1 | chr1:12023360-12024502 FORWARD LENGTH=195 289 5e-79
AT1G33120.1 | chr1:12010986-12012223 FORWARD LENGTH=195 289 5e-79
AT4G10450.1 | chr4:6463201-6464458 REVERSE LENGTH=195 289 7e-79
>AT1G33140.1 | chr1:12023360-12024502 FORWARD LENGTH=195
Length = 194
Score = 289 bits (740), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/194 (71%), Positives = 162/194 (83%), Gaps = 2/194 (1%)
Query: 1 MKTILASETMEIPSGXXXXXXXXXXXXEGPRGKLTRNFKHLNLDFQLLEVE--GVRKLQV 58
MKTIL+SETM+IP EGPRGKL R+FKHLNLDFQL++ G +KL++
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 59 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 118
D+WFGTR+T A+IRTA+SHV NLI+GVT+G+RYKMRFVYAHFPINASI +IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 119 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 178
LGEKKVRKV+ML+GVTI+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 179 GIYVSDKGTITEDQ 192
GIYVS+K I E++
Sbjct: 181 GIYVSEKSKIVEEE 194
>AT1G33120.1 | chr1:12010986-12012223 FORWARD LENGTH=195
Length = 194
Score = 289 bits (740), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/194 (71%), Positives = 162/194 (83%), Gaps = 2/194 (1%)
Query: 1 MKTILASETMEIPSGXXXXXXXXXXXXEGPRGKLTRNFKHLNLDFQLLEVE--GVRKLQV 58
MKTIL+SETM+IP EGPRGKL R+FKHLNLDFQL++ G +KL++
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 59 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 118
D+WFGTR+T A+IRTA+SHV NLI+GVT+G+RYKMRFVYAHFPINASI +IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 119 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 178
LGEKKVRKV+ML+GVTI+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 179 GIYVSDKGTITEDQ 192
GIYVS+K I E++
Sbjct: 181 GIYVSEKSKIVEEE 194
>AT4G10450.1 | chr4:6463201-6464458 REVERSE LENGTH=195
Length = 194
Score = 289 bits (739), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 137/194 (70%), Positives = 164/194 (84%), Gaps = 2/194 (1%)
Query: 1 MKTILASETMEIPSGXXXXXXXXXXXXEGPRGKLTRNFKHLNLDFQLL--EVEGVRKLQV 58
MKTIL+SETM+IP G EGPRGKLTR+FKHLNLDFQL+ +V G R+L++
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 59 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 118
D+WFG+R+T A+IRTA+SHV NLI GVT+G+ Y+MRFVYAHFPINASI +N +IEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 119 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 178
LGEKKVRKV+ML+GV I+RSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 179 GIYVSDKGTITEDQ 192
GIYVS+KG I ++
Sbjct: 181 GIYVSEKGKIAVEE 194
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,380,553
Number of extensions: 122327
Number of successful extensions: 334
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 3
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)