FiT-DB / Search/ Help/ Sample detail

Os01g0976600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Methlytransferase, UbiE/COQ5 family.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.22 (0.0212) R2 : 0.0218
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.142 (0.0447) R2dN8 : 0.0281 R2N8 : 0.0218
σ : 0.399
deviance : 73.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.48 0.313 9.31 -0.918 0.0854 1.18 0.538 -2.21 -0.424 15.6 11.35 234 -- --
47.13 0.32 9.26 -0.594 0.0474 1.2 0.0399 -- -0.347 15.4 7.901 194 -- --
45.15 0.313 9.3 -0.83 0.0779 1.2 -- -1.65 -0.401 16.1 8.675 220 -- --
47.05 0.319 9.27 -0.583 0.0708 1.18 -- -- -0.335 17.1 6.102 193 -- --
45.38 0.314 9.3 -0.834 -- 1.28 -- -1.58 -0.411 -- 9.369 212 -- --
61 0.366 9.24 -0.337 0.404 -- 0.227 -- -0.172 16.2 -- -- -- --
61.14 0.366 9.23 -0.335 0.405 -- -- -- -0.17 16.2 -- -- -- --
47.23 0.32 9.27 -0.6 -- 1.25 -- -- -0.346 -- 2.743 195 -- --
55.08 0.346 9.25 -- 0.161 0.893 -- -- -0.237 16.6 12.87 184 -- --
70 0.391 9.23 -0.351 -- -- -- -- -0.181 -- -- -- -- --
64.1 0.375 9.23 -- 0.411 -- -- -- -0.133 16.2 -- -- -- --
56.08 0.349 9.25 -- -- 1.05 -- -- -0.257 -- 10.91 187 -- --
73.25 0.399 9.22 -- -- -- -- -- -0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.38 humidity 90 14400 > th dose independent rect. 21 1
2 43.50 humidity 90 14400 > th dose dependent rect. 21 2
4 43.68 humidity 90 14400 > th dose dependent rect. 19 6
8 43.75 humidity 90 14400 < th dose independent rect. 20 2
14 43.88 humidity 90 14400 < th dose independent rect. 18 5
28 44.13 humidity 90 14400 > th dose independent rect. 18 5
32 44.17 radiation 1 14400 > th dose independent rect. 18 12
35 44.26 temperature 15 270 > th dose dependent rect. 19 23
39 44.30 temperature 30 270 < th dose dependent rect. 2 23
45 44.37 temperature 15 90 > th dose dependent rect. 8 23
47 44.38 humidity 90 14400 > th dose dependent sin 15 NA
56 44.46 temperature 15 270 > th dose dependent rect. 23 23
65 44.54 temperature 10 270 > th dose dependent no NA NA
89 44.79 humidity 80 14400 > th dose dependent rect. 18 1
95 44.82 temperature 15 270 > th dose dependent rect. 16 23
100 44.84 temperature 15 270 > th dose dependent rect. 6 23
103 44.86 humidity 90 14400 > th dose dependent rect. 3 22
107 44.89 humidity 90 14400 > th dose dependent rect. 9 19
110 44.90 humidity 90 14400 > th dose dependent rect. 15 19
115 44.92 humidity 90 14400 > th dose dependent rect. 17 18
126 44.93 temperature 30 270 < th dose dependent rect. 14 23
157 44.98 humidity 90 14400 < th dose independent rect. 18 1
190 45.02 humidity 90 14400 > th dose dependent rect. 9 23
192 45.03 humidity 90 14400 > th dose independent rect. 18 16
194 45.03 humidity 90 14400 > th dose dependent no NA NA
205 45.05 humidity 90 14400 < th dose independent rect. 17 18
232 45.09 temperature 30 270 < th dose dependent no NA NA
254 45.14 humidity 90 14400 > th dose independent sin 15 NA
261 45.15 radiation 1 14400 < th dose independent rect. 18 12
353 45.33 humidity 80 43200 < th dose dependent rect. 23 1
384 45.39 humidity 90 14400 < th dose independent sin 16 NA
410 45.42 temperature 15 720 > th dose dependent rect. 16 21
445 45.48 humidity 80 43200 < th dose dependent rect. 21 10
461 45.50 humidity 80 43200 < th dose dependent rect. 21 5
465 45.51 humidity 90 14400 > th dose independent rect. 7 21
484 45.53 humidity 90 14400 > th dose independent rect. 9 19
489 45.53 temperature 30 90 < th dose dependent rect. 21 23
491 45.54 wind 1 43200 > th dose independent rect. 8 2
520 45.57 humidity 90 14400 < th dose independent rect. 7 20
562 45.62 humidity 80 43200 > th dose independent rect. 24 1
567 45.62 humidity 90 14400 > th dose independent rect. 1 22
570 45.62 humidity 90 14400 < th dose independent rect. 24 23
607 45.65 humidity 80 43200 < th dose independent rect. 23 8
609 45.65 humidity 90 14400 > th dose independent rect. 9 23
627 45.66 temperature 30 90 < th dose dependent rect. 5 20
637 45.68 humidity 90 14400 > th dose independent no NA NA
645 45.69 humidity 80 43200 > th dose independent rect. 21 10
655 45.70 humidity 90 14400 > th dose independent rect. 9 16
671 45.72 humidity 80 43200 > th dose independent rect. 4 1
673 45.72 humidity 80 43200 < th dose independent rect. 21 10
695 45.74 humidity 80 43200 > th dose independent rect. 3 4
698 45.74 radiation 1 14400 < th dose independent rect. 23 7
708 45.75 radiation 1 14400 > th dose independent rect. 4 2
709 45.75 radiation 1 14400 < th dose independent rect. 4 2
747 45.76 temperature 15 1440 > th dose dependent rect. 17 6
774 45.79 humidity 80 43200 < th dose independent rect. 3 4
819 45.81 temperature 15 270 > th dose dependent rect. 12 23
821 45.81 temperature 30 270 < th dose dependent rect. 10 23
825 45.82 humidity 80 43200 > th dose independent rect. 23 8
836 45.83 humidity 90 14400 < th dose independent no NA NA
837 45.83 humidity 80 43200 < th dose independent rect. 3 2
892 45.87 temperature 30 1440 < th dose dependent rect. 17 6
951 45.92 humidity 80 14400 > th dose independent rect. 10 1