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Os01g0966500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Vacuolar protein sorting 55 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0147) R2 : 0.00649
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0536 (0.031) R2dN8 : 0.00838 R2N8 : 0.00649
σ : 0.278
deviance : 35.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.57 0.247 11.5 -1 0.298 -0.349 0.156 4.34 -0.0783 4.17 29.8 1453 -- --
29.98 0.255 11.4 -0.0712 0.28 0.176 0.0837 -- 0.0144 4.25 29.9 1599 -- --
27.59 0.245 11.5 -1.03 0.3 -0.329 -- 4.27 -0.0955 4.09 29.78 1458 -- --
29.5 0.253 11.4 -0.0511 0.278 0.211 -- -- 0.0136 3.81 29.9 3720 -- --
31.93 0.263 11.5 -0.806 -- -0.309 -- 4.77 -0.0569 -- 29.9 1958 -- --
31.01 0.261 11.4 -0.115 0.273 -- 0.0872 -- 0.0352 4.13 -- -- -- --
31.04 0.261 11.4 -0.116 0.273 -- -- -- 0.0347 4.07 -- -- -- --
33.76 0.272 11.4 -0.084 -- 0.187 -- -- 0.0345 -- 30 3599 -- --
29.55 0.253 11.4 -- 0.281 0.232 -- -- 0.00338 3.85 30.4 3773 -- --
35.08 0.277 11.4 -0.105 -- -- -- -- 0.0419 -- -- -- -- --
31.39 0.262 11.4 -- 0.271 -- -- -- 0.0476 4.08 -- -- -- --
33.42 0.27 11.4 -- -- 0.262 -- -- 0.0299 -- 30.4 3773 -- --
35.37 0.278 11.4 -- -- -- -- -- 0.0536 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.63 precipitation 0.1 43200 > th dose independent rect. 17 2
2 26.66 precipitation 0.1 43200 < th dose independent rect. 17 2
3 26.66 precipitation 0.1 43200 < th dose dependent rect. 17 2
4 26.72 precipitation 0.1 43200 > th dose dependent rect. 15 4
6 26.76 precipitation 0.1 43200 > th dose dependent rect. 17 5
12 26.90 wind 1.0 14400 > th dose independent rect. 20 2
14 26.96 precipitation 0.1 43200 < th dose independent rect. 20 1
16 26.96 precipitation 0.1 43200 < th dose dependent rect. 20 1
22 26.99 precipitation 0.1 43200 > th dose dependent rect. 20 1
25 27.00 precipitation 0.1 43200 > th dose independent rect. 20 1
28 27.01 precipitation 0.1 43200 > th dose independent rect. 17 4
29 27.02 precipitation 0.1 43200 < th dose independent rect. 17 4
30 27.02 precipitation 0.1 43200 < th dose dependent rect. 17 4
49 27.15 wind 1.0 14400 < th dose independent rect. 20 2
82 27.27 wind 1.0 43200 < th dose dependent rect. 19 2
93 27.30 precipitation 0.1 43200 > th dose dependent sin 18 NA
97 27.31 atmosphere 1000.0 43200 < th dose independent rect. 2 1
102 27.32 atmosphere 1000.0 43200 > th dose independent rect. 2 1
130 27.36 atmosphere 1005.0 43200 < th dose dependent rect. 11 12
133 27.36 atmosphere 1005.0 43200 < th dose dependent rect. 11 21
142 27.37 atmosphere 1005.0 43200 < th dose dependent sin 18 NA
145 27.37 atmosphere 1005.0 43200 < th dose dependent rect. 14 1
147 27.37 atmosphere 1005.0 43200 < th dose dependent rect. 11 9
169 27.37 atmosphere 1005.0 43200 < th dose dependent rect. 22 20
186 27.37 atmosphere 1005.0 43200 < th dose dependent rect. 19 23
195 27.38 atmosphere 1005.0 43200 < th dose dependent no NA NA
200 27.38 atmosphere 1005.0 43200 < th dose dependent rect. 11 7
220 27.38 atmosphere 1005.0 43200 < th dose dependent rect. 14 18
221 27.38 atmosphere 1005.0 43200 < th dose dependent rect. 23 18
272 27.39 atmosphere 1000.0 43200 > th dose independent rect. 20 1
276 27.39 atmosphere 1000.0 43200 > th dose independent rect. 20 8
281 27.39 wind 1.0 14400 < th dose dependent rect. 18 4
364 27.41 atmosphere 1000.0 43200 < th dose independent rect. 20 1
371 27.41 atmosphere 1005.0 43200 < th dose dependent sin 8 NA
417 27.42 atmosphere 1005.0 43200 < th dose dependent rect. 4 1
419 27.42 atmosphere 1005.0 43200 < th dose dependent rect. 3 4
423 27.42 atmosphere 1005.0 43200 < th dose dependent rect. 2 6
425 27.42 atmosphere 1005.0 43200 < th dose dependent rect. 23 9
434 27.42 atmosphere 1005.0 43200 < th dose dependent rect. 19 13
467 27.43 atmosphere 1005.0 43200 < th dose dependent rect. 19 1
552 27.45 atmosphere 1000.0 43200 < th dose dependent rect. 19 9
643 27.48 atmosphere 1005.0 43200 < th dose dependent rect. 22 1
737 27.51 humidity 60.0 14400 < th dose dependent rect. 18 1
956 27.62 temperature 30.0 1440 < th dose independent rect. 4 12
968 27.62 humidity 60.0 14400 < th dose dependent rect. 17 16
975 27.63 temperature 30.0 1440 < th dose independent rect. 8 8