BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0966500 Os01g0966500|AK071603
         (113 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11530.1  | chr3:3628801-3629885 REVERSE LENGTH=114            202   4e-53
AT1G32410.1  | chr1:11694398-11695297 FORWARD LENGTH=141          127   1e-30

>AT3G11530.1 | chr3:3628801-3629885 REVERSE LENGTH=114
          Length = 113

 Score =  202 bits (513), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 105/113 (92%)

Query: 1   MFSTSILLQILACALYNNWWPMLAALMYVLVPMPCLFFGGGSTQFLTSRDGGGWFNAAKF 60
           MFS+SILLQILACA+Y NWWPML+ALMYV+VPMPC+FFGGGSTQFL SRDGGGW +AAKF
Sbjct: 1   MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 60

Query: 61  LTGASAMGSIAIPAILRHAGLIETGAMFIEFTSFFILVCTVMCFHRATLDEDW 113
           LTGAS +GS+AIP ILRHA +IETGAM IEFTSFFI +CTVMCFHRA+LD+DW
Sbjct: 61  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 113



>AT1G32410.1 | chr1:11694398-11695297 FORWARD LENGTH=141
          Length = 140

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 80/104 (76%)

Query: 1   MFSTSILLQILACALYNNWWPMLAALMYVLVPMPCLFFGGGSTQFLTSRDGGGWFNAAKF 60
           + ST I+LQILACAL+NNWWPML+ +MYVL+PMP LFFGG  +  L +     W NAAKF
Sbjct: 23  LVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKF 82

Query: 61  LTGASAMGSIAIPAILRHAGLIETGAMFIEFTSFFILVCTVMCF 104
           LTGASA+GS+AIP+IL+HAGLI  GA+ ++ +S+ + +  ++ +
Sbjct: 83  LTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGY 126



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.332    0.141    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,278,686
Number of extensions: 82121
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 104 (44.7 bits)