Os01g0965500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuclear protein SET domain containing protein.
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Os01g0965500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuclear protein SET domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.7 | 0.265 | 8.59 | -0.324 | 0.273 | -0.399 | -1.08 | -1.24 | -0.44 | 21.4 | 53.12 | 1298 | -- | -- |
| 33.96 | 0.271 | 8.6 | -0.475 | 0.275 | -0.484 | -1.02 | -- | -0.465 | 21.2 | 47.21 | 1290 | -- | -- |
| 35.23 | 0.276 | 8.58 | -0.27 | 0.284 | -0.33 | -- | -1.18 | -0.417 | 21.8 | 54.06 | 1455 | -- | -- |
| 37.36 | 0.285 | 8.59 | -0.427 | 0.3 | -0.44 | -- | -- | -0.466 | 22.1 | 50.08 | 1432 | -- | -- |
| 38.88 | 0.29 | 8.6 | -0.353 | -- | -0.634 | -- | -0.404 | -0.459 | -- | 56.12 | 955 | -- | -- |
| 39.45 | 0.294 | 8.59 | -0.432 | 0.314 | -- | -0.883 | -- | -0.445 | 21.8 | -- | -- | -- | -- |
| 42.3 | 0.305 | 8.59 | -0.401 | 0.317 | -- | -- | -- | -0.445 | 22.4 | -- | -- | -- | -- |
| 38.84 | 0.29 | 8.59 | -0.425 | -- | -0.64 | -- | -- | -0.462 | -- | 52.37 | 951 | -- | -- |
| 41.33 | 0.299 | 8.6 | -- | 0.279 | -0.508 | -- | -- | -0.492 | 22.1 | 64.68 | 2775 | -- | -- |
| 48.45 | 0.325 | 8.58 | -0.396 | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
| 46.53 | 0.319 | 8.58 | -- | 0.315 | -- | -- | -- | -0.4 | 22.3 | -- | -- | -- | -- |
| 43.23 | 0.306 | 8.6 | -- | -- | -0.715 | -- | -- | -0.503 | -- | 66.29 | 2327 | -- | -- |
| 52.58 | 0.338 | 8.57 | -- | -- | -- | -- | -- | -0.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.16 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 2 | 29.33 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 8 | 29.51 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 9 | 29.52 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 11 | 29.53 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 12 | 29.55 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 21 | 29.64 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 30 | 29.68 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 2 |
| 34 | 29.71 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 51 | 29.79 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 66 | 29.89 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 76 | 29.95 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 109 | 30.06 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 123 | 30.09 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 141 | 30.14 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 156 | 30.18 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 170 | 30.19 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 10 |
| 255 | 30.34 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 279 | 30.37 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 290 | 30.39 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 295 | 30.39 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 300 | 30.40 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 308 | 30.41 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 311 | 30.42 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 323 | 30.44 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 355 | 30.49 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 364 | 30.49 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 365 | 30.50 | wind | 3.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 371 | 30.50 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 385 | 30.52 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 440 | 30.60 | wind | 1.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 443 | 30.61 | wind | 3.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 459 | 30.62 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 491 | 30.66 | wind | 7.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 533 | 30.72 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 537 | 30.72 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 538 | 30.72 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 548 | 30.73 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 555 | 30.73 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 582 | 30.76 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 586 | 30.76 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 605 | 30.78 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 655 | 30.82 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 663 | 30.83 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 682 | 30.84 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 11 | 8 |
| 684 | 30.84 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 12 |
| 689 | 30.85 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 718 | 30.87 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 827 | 30.96 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 839 | 30.96 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 851 | 30.97 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 879 | 30.99 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 882 | 31.00 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 883 | 31.00 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 918 | 31.02 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 925 | 31.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 938 | 31.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 952 | 31.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 971 | 31.04 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 975 | 31.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 992 | 31.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |