BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0965500 Os01g0965500|J075073G20
         (158 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24330.1  | chr5:8295245-8296997 REVERSE LENGTH=350            112   6e-26
AT5G09790.2  | chr5:3039204-3040970 REVERSE LENGTH=380            103   5e-23

>AT5G24330.1 | chr5:8295245-8296997 REVERSE LENGTH=350
          Length = 349

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 1   MTQTKIVDFFRIQKGAEDAEAEKYGLFQDVKKRRKRSLVMHKKRRRILPYVPTEDKVQRL 60
           + QTKI+DFFRI++  + ++          KKR+K SLVM KK+RR+LPY P+ D  +RL
Sbjct: 90  LIQTKIIDFFRIKRSPDSSQISSSSDSIG-KKRKKTSLVMSKKKRRLLPYNPSNDPQRRL 148

Query: 61  KQMASLATAMTSSKMKFSNELTYMPGMAGRSCNQATLEEGGMQV-SKDG 108
           +QMASLATA+ +S  KFSNELTY+ G A RS NQA  E+GGMQV SK+G
Sbjct: 149 EQMASLATALRASNTKFSNELTYVSGKAPRSANQAAFEKGGMQVLSKEG 197




 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 53/69 (76%)

Query: 90  RSCNQATLEEGGMQVSKDGKKKKNIKCVRYDIDGESHVLLVACRDIACGEKLYYDYNGYE 149
           R  N A    G    S +G+KK+N+KCVR++I+GE+ VLLVA RDI+ GE+LYYDYNGYE
Sbjct: 281 RRSNIARFISGINNHSPEGRKKQNLKCVRFNINGEARVLLVANRDISKGERLYYDYNGYE 340

Query: 150 HEYPTHHFV 158
           HEYPT HFV
Sbjct: 341 HEYPTEHFV 349



>AT5G09790.2 | chr5:3039204-3040970 REVERSE LENGTH=380
          Length = 379

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 73/104 (70%)

Query: 1   MTQTKIVDFFRIQKGAEDAEAEKYGLFQDVKKRRKRSLVMHKKRRRILPYVPTEDKVQRL 60
           ++Q KI+ FFRI+K     +  +    +  K+RR  SL + K+RR++LP VP+ED  QRL
Sbjct: 120 LSQKKILHFFRIEKHTHQTDKLELSQEETRKRRRSCSLTVKKRRRKLLPLVPSEDPDQRL 179

Query: 61  KQMASLATAMTSSKMKFSNELTYMPGMAGRSCNQATLEEGGMQV 104
            QM +LA+A+T+  +K+S+ L Y+PGMA RS NQ+ LE+GGMQV
Sbjct: 180 AQMGTLASALTALGIKYSDGLNYVPGMAPRSANQSKLEKGGMQV 223




 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 44/51 (86%)

Query: 108 GKKKKNIKCVRYDIDGESHVLLVACRDIACGEKLYYDYNGYEHEYPTHHFV 158
            KKK+N KCVRY I+GE  VLLVA RDI+ GE+LYYDYNGYEHEYPTHHF+
Sbjct: 329 AKKKQNCKCVRYSINGECRVLLVATRDISKGERLYYDYNGYEHEYPTHHFL 379



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,432,457
Number of extensions: 133493
Number of successful extensions: 423
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 4
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)