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Os01g0958700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Membrane attack complex component/perforin/complement C9 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.014) R2 : 0.0177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0845 (0.0295) R2dN8 : 0.0229 R2N8 : 0.0177
σ : 0.264
deviance : 31.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.46 0.172 12.5 0.191 0.499 0.134 -0.0645 1.01 0.0717 2.4 1000 3547 -- --
14.62 0.179 12.4 0.274 0.488 0.217 -0.134 -- 0.0698 2.35 998.2 4828 -- --
13.47 0.171 12.5 0.192 0.499 0.133 -- 1.02 0.0722 2.39 1000 3486 -- --
14.69 0.18 12.4 0.278 0.488 0.214 -- -- 0.071 2.32 998.2 4828 -- --
28.1 0.247 12.5 0.208 -- 0.0711 -- 1.06 0.0934 -- 999.6 3199 -- --
15.26 0.183 12.4 0.263 0.494 -- -0.121 -- 0.103 2.41 -- -- -- --
15.31 0.183 12.4 0.266 0.494 -- -- -- 0.104 2.39 -- -- -- --
28.64 0.25 12.4 0.304 -- 0.321 -- -- 0.0736 -- 992.4 11832 -- --
16.41 0.189 12.4 -- 0.498 -0.163 -- -- 0.0659 2.42 996.2 40477 -- --
29.74 0.255 12.4 0.287 -- -- -- -- 0.116 -- -- -- -- --
17.18 0.194 12.4 -- 0.499 -- -- -- 0.0745 2.4 -- -- -- --
30.84 0.259 12.4 -- -- -0.189 -- -- 0.0726 -- 989.7 41128 -- --
31.91 0.264 12.4 -- -- -- -- -- 0.0845 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.66 radiation 10.0 14400 < th dose dependent rect. 13 1
2 12.77 radiation 10.0 14400 < th dose independent rect. 13 1
5 12.93 radiation 10.0 14400 > th dose independent rect. 13 1
9 13.06 atmosphere 1005.0 90 < th dose dependent rect. 8 15
10 13.09 wind 1.0 43200 < th dose dependent rect. 2 5
11 13.09 atmosphere 1005.0 90 < th dose dependent rect. 8 17
13 13.10 atmosphere 1005.0 10 < th dose dependent rect. 9 15
20 13.13 atmosphere 1005.0 270 < th dose dependent rect. 6 17
21 13.13 atmosphere 1005.0 90 < th dose dependent rect. 8 19
23 13.14 atmosphere 1005.0 10 < th dose dependent rect. 9 13
37 13.16 atmosphere 1005.0 90 < th dose dependent rect. 8 13
55 13.18 atmosphere 1010.0 720 < th dose dependent rect. 9 1
74 13.21 wind 1.0 43200 > th dose independent rect. 1 5
75 13.21 atmosphere 1000.0 10 < th dose independent rect. 9 15
76 13.21 atmosphere 995.0 1440 > th dose dependent rect. 9 1
83 13.22 wind 1.0 43200 < th dose dependent rect. 2 2
85 13.22 atmosphere 995.0 720 > th dose dependent rect. 4 11
98 13.23 wind 1.0 43200 < th dose independent rect. 1 4
111 13.24 atmosphere 995.0 720 > th dose dependent sin 2 NA
137 13.26 humidity 80.0 14400 < th dose dependent rect. 20 1
140 13.26 humidity 80.0 14400 < th dose dependent rect. 19 5
145 13.27 wind 1.0 43200 < th dose independent rect. 2 2
152 13.27 atmosphere 1005.0 10 < th dose dependent sin 21 NA
163 13.28 atmosphere 1000.0 10 < th dose independent rect. 9 13
178 13.29 atmosphere 1000.0 10 > th dose independent sin 21 NA
180 13.29 humidity 80.0 14400 > th dose independent rect. 20 3
193 13.29 atmosphere 1005.0 90 < th dose dependent rect. 8 7
202 13.30 wind 1.0 43200 > th dose independent rect. 3 3
222 13.31 humidity 80.0 14400 > th dose independent rect. 19 6
245 13.32 atmosphere 1005.0 720 < th dose dependent sin 2 NA
266 13.33 temperature 30.0 14400 < th dose independent rect. 8 2
319 13.34 atmosphere 1005.0 10 < th dose dependent rect. 9 7
326 13.35 temperature 30.0 14400 > th dose independent rect. 8 2
362 13.35 atmosphere 1005.0 720 < th dose dependent rect. 5 8
377 13.36 humidity 80.0 14400 < th dose independent rect. 20 2
393 13.36 atmosphere 1005.0 720 < th dose dependent rect. 3 12
395 13.36 atmosphere 1005.0 720 < th dose dependent rect. 2 15
403 13.37 atmosphere 1000.0 10 < th dose independent sin 21 NA
409 13.37 humidity 80.0 14400 < th dose independent rect. 19 6
441 13.38 temperature 25.0 14400 > th dose independent rect. 6 1
449 13.38 temperature 30.0 14400 > th dose dependent rect. 8 2
513 13.39 radiation 10.0 14400 > th dose independent rect. 6 1
520 13.39 atmosphere 1000.0 10 < th dose independent rect. 9 7
522 13.39 atmosphere 995.0 270 > th dose dependent sin 22 NA
528 13.39 radiation 30.0 4320 > th dose dependent rect. 14 1
568 13.40 temperature 25.0 14400 < th dose independent rect. 6 1
602 13.41 atmosphere 1005.0 4320 > th dose independent rect. 8 1
611 13.41 atmosphere 1000.0 90 < th dose independent rect. 8 7
625 13.41 radiation 1.0 14400 > th dose dependent rect. 13 1
794 13.44 precipitation 0.1 43200 > th dose dependent rect. 15 2
847 13.45 precipitation 0.1 43200 > th dose independent rect. 13 5
848 13.45 precipitation 0.1 43200 < th dose independent rect. 13 5
864 13.45 wind 9.0 43200 > th dose dependent rect. 18 1
879 13.45 precipitation 0.1 43200 < th dose dependent rect. 13 5
932 13.46 radiation 40.0 14400 > th dose independent rect. 10 1
934 13.46 atmosphere 1005.0 4320 < th dose independent rect. 7 2
960 13.46 atmosphere 1000.0 30 > th dose independent rect. 1 23
962 13.46 atmosphere 995.0 10 > th dose dependent sin 20 NA
967 13.46 precipitation 0.1 43200 > th dose dependent rect. 13 1