Os01g0954400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0954400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.66 | 0.354 | 12.7 | -0.998 | 1.26 | -1.47 | 1.69 | 0.959 | -0.14 | 4.53 | 20.46 | 250 | -- | -- |
| 56.88 | 0.351 | 12.7 | -1.18 | 1.29 | -1.44 | 1.36 | -- | -0.181 | 4.7 | 20.4 | 211 | -- | -- |
| 59.68 | 0.36 | 12.8 | -1.38 | 1.33 | -1.54 | -- | -1.22 | -0.233 | 5.38 | 19.76 | 89 | -- | -- |
| 60.7 | 0.363 | 12.7 | -1.19 | 1.27 | -1.52 | -- | -- | -0.195 | 5.18 | 21.7 | 121 | -- | -- |
| 111.8 | 0.492 | 12.7 | -1.17 | -- | -2.38 | -- | -0.736 | -0.204 | -- | 24.1 | 162 | -- | -- |
| 90.67 | 0.446 | 12.8 | -1.5 | 1.82 | -- | 1.83 | -- | -0.434 | 4.59 | -- | -- | -- | -- |
| 99.47 | 0.467 | 12.8 | -1.51 | 1.84 | -- | -- | -- | -0.443 | 4.69 | -- | -- | -- | -- |
| 109.7 | 0.488 | 12.7 | -1.05 | -- | -2.47 | -- | -- | -0.15 | -- | 24.1 | 192 | -- | -- |
| 93.84 | 0.451 | 12.7 | -- | 1.14 | -2.01 | -- | -- | 0.00347 | 5.28 | 18.52 | 163 | -- | -- |
| 279.09 | 0.781 | 12.8 | -1.44 | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
| 159.64 | 0.591 | 12.7 | -- | 1.81 | -- | -- | -- | -0.275 | 4.72 | -- | -- | -- | -- |
| 136.64 | 0.544 | 12.7 | -- | -- | -2.65 | -- | -- | 0.0306 | -- | 23.54 | 202 | -- | -- |
| 333.87 | 0.853 | 12.8 | -- | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 7 | 52.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 9 | 53.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 19 | 53.48 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 23 | 53.58 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 34 | 54.11 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 47 | 54.47 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 64 | 54.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 79 | 55.10 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 88 | 55.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 16 |
| 98 | 55.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 119 | 55.57 | temperature | 15 | 90 | > th | dose dependent | sin | 23 | NA |
| 123 | 55.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 127 | 55.69 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 6 |
| 138 | 55.81 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 143 | 55.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 149 | 55.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 162 | 56.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 166 | 56.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 168 | 56.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 187 | 56.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 207 | 56.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 236 | 56.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 286 | 56.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 319 | 56.95 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 368 | 57.16 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 424 | 57.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 460 | 57.61 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 483 | 57.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 793 | 58.72 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 14 |
| 824 | 58.77 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 833 | 58.79 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 13 |
| 847 | 58.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 856 | 58.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 872 | 58.91 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 873 | 58.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 952 | 59.07 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 993 | 59.15 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |