BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0954400 Os01g0954400|AK065709
         (280 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12310.1  | chr5:3980485-3982093 REVERSE LENGTH=255            185   2e-47
AT5G19430.1  | chr5:6553998-6555616 FORWARD LENGTH=256            184   4e-47

>AT5G12310.1 | chr5:3980485-3982093 REVERSE LENGTH=255
          Length = 254

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 110/149 (73%), Gaps = 1/149 (0%)

Query: 53  AICLDKIALQETALVKGCDHAYCVTCILRWASYKQTPQCPQCKHPFDFLSVHRSLDGCIH 112
           AICLD I LQETA+VKGC+HAYCVTCILRWASYK+ P CPQCK PFDFL+VHR+LDG + 
Sbjct: 44  AICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHRALDGSVE 103

Query: 113 DYMFEESVCLLLRATWFEPL-IVXXXXXXXXXXXXYHIYQYDDGVEDDLDEEAYYMSRSP 171
           D+MFEESVCLLLRA+WF+PL  V            + I    +  ++D D+   +  +  
Sbjct: 104 DFMFEESVCLLLRASWFQPLEAVERVSDNDNFNYDFDIPPEYEEEDEDDDDLDEFYMQGS 163

Query: 172 SIRIGNRRWGDNGYVRGGRKEARPVSRQS 200
           S+R+GNRRWGDNG+VR GR+EARPV  ++
Sbjct: 164 SLRLGNRRWGDNGFVRAGRQEARPVQHKN 192



>AT5G19430.1 | chr5:6553998-6555616 FORWARD LENGTH=256
          Length = 255

 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 104/156 (66%), Gaps = 22/156 (14%)

Query: 53  AICLDKIALQETALVKGCDHAYCVTCILRWASYKQTPQCPQCKHPFDFLSVHRSLDGCIH 112
           AICL +I LQETA+VKGC+H YCVTCILRWAS K++P CPQCKHPFDFLSVHR+LDG I 
Sbjct: 47  AICLSEIPLQETAMVKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIE 106

Query: 113 DYMFEESVCLLLRATWFEPLIVXXXXXXXXXXXXYHIYQYDDGVEDDLD----------E 162
           D++FEESVCLLLRA+WF PL V                 Y  G  DD D          +
Sbjct: 107 DFLFEESVCLLLRASWFVPLDVVEQAS------------YSHGYHDDFDIPYDYEDEDDD 154

Query: 163 EAYYMSRSPSIRIGNRRWGDNGYVRGGRKEARPVSR 198
              +     S+RIGNRRWG NG+VR GR+EARPV R
Sbjct: 155 LDEFYLHGSSLRIGNRRWGGNGFVRSGRQEARPVQR 190



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,655,116
Number of extensions: 179611
Number of successful extensions: 789
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)