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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0952800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.0903) R2 : 0.277
β1 : 0.227 (0.267) R2dD : 0.00214 R2D : -0.193
β2 : 0.487 (0.146) R2dC : 0.0199 R2C : -0.148
β3 : 23.5 (3.1) R2dE : 3.92 R2E : -2.5
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 54.8 (8.62) R2dD*E : 2.75 R2D*E : -3.82
γ1 : -0.639 (0.131) R2dN8 : 0.0513 R2N8 : -0.062
σ : 1.13
deviance : 591.18
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_____
C
peak time of C : 23.8
E
wheather : radiation
threshold : 0.4321
memory length : 663
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 5.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
590.14 1.14 4.25 0.292 0.505 23.6 0.552 54.8 -0.624 23.6 0.4995 666 11 5.6
724.48 1.26 3.87 -1.06 0.618 1.47 0.0789 -- -0.712 23.2 0.4995 666 11 5.6
591.18 1.13 4.26 0.227 0.487 23.5 -- 54.8 -0.639 23.8 0.4321 663 11 5.6
634.17 1.17 3.89 -0.759 0.598 4.58 -- -- -0.661 23.2 1.39 608 12.1 3.12
607.06 1.15 4.25 0.311 -- 23.8 -- 54.9 -0.615 -- 0.448 665 11 5.6
731.64 1.27 3.88 -1.14 0.601 -- 0.165 -- -0.737 22.9 -- -- -- --
731.76 1.27 3.88 -1.15 0.6 -- -- -- -0.738 22.9 -- -- -- --
648.61 1.19 3.89 -0.672 -- 4.91 -- -- -0.641 -- 1.466 608 11.9 3.33
645.01 1.18 3.83 -- 0.539 5.18 -- -- -0.538 23.6 1.157 608 11.9 3.38
754.12 1.28 3.86 -1.13 -- -- -- -- -0.734 -- -- -- -- --
766.38 1.29 3.85 -- 0.591 -- -- -- -0.61 22.8 -- -- -- --
659.15 1.2 3.82 -- -- 5.3 -- -- -0.513 -- 0.9733 608 11.9 3.3
788.01 1.31 3.83 -- -- -- -- -- -0.608 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 598.20 radiation 1 720 < th dose independent rect. 10 5
2 598.20 radiation 1 720 < th dose dependent rect. 10 5
3 598.82 radiation 1 720 < th dose independent rect. 13 2
4 598.82 radiation 1 720 < th dose dependent rect. 13 2
18 607.35 radiation 1 1440 < th dose independent rect. 11 1
19 607.35 radiation 1 1440 < th dose dependent rect. 11 1
29 609.34 humidity 90 720 > th dose independent rect. 12 1
31 609.34 humidity 90 720 > th dose dependent rect. 12 1
41 617.66 humidity 80 14400 > th dose independent rect. 19 13
51 620.44 humidity 80 14400 > th dose independent sin 10 NA
65 621.94 humidity 80 14400 < th dose independent rect. 19 13
75 622.85 humidity 90 14400 < th dose dependent rect. 20 12
79 623.03 atmosphere 1005 90 < th dose independent rect. 17 7
84 623.43 radiation 1 1440 > th dose independent rect. 11 1
88 623.73 radiation 1 1440 > th dose independent rect. 9 5
91 623.91 atmosphere 1005 10 < th dose independent rect. 18 6
104 624.72 humidity 90 14400 < th dose dependent rect. 20 9
105 624.91 radiation 1 1440 > th dose independent rect. 13 1
106 625.03 humidity 80 14400 < th dose independent sin 10 NA
153 627.16 humidity 80 14400 < th dose independent rect. 20 7
188 629.08 humidity 80 14400 > th dose independent rect. 22 5
218 630.64 humidity 80 14400 < th dose dependent rect. 20 3
249 632.03 humidity 80 14400 > th dose independent rect. 23 2
268 632.97 humidity 80 14400 < th dose dependent rect. 4 1
283 633.71 humidity 80 14400 < th dose dependent rect. 1 1
290 634.16 humidity 60 14400 < th dose independent rect. 6 1
292 634.16 humidity 60 14400 < th dose independent rect. 20 1
294 634.16 radiation 20 14400 > th dose independent rect. 17 1
345 634.16 humidity 60 14400 < th dose dependent rect. 6 1
347 634.16 humidity 60 14400 < th dose dependent rect. 20 1
349 634.16 radiation 20 14400 > th dose dependent rect. 17 1
407 634.63 humidity 80 14400 < th dose dependent rect. 1 4
409 634.73 wind 9 14400 > th dose dependent rect. 13 2
468 637.21 wind 9 14400 > th dose independent rect. 13 2
498 638.02 humidity 60 14400 > th dose independent rect. 1 7
522 639.13 humidity 60 14400 > th dose independent rect. 7 1
534 639.54 radiation 1 1440 > th dose independent rect. 4 1
544 639.54 radiation 1 1440 > th dose dependent rect. 4 1
588 641.08 humidity 60 14400 > th dose independent rect. 21 11
624 642.69 humidity 90 14400 < th dose dependent sin 10 NA
646 643.49 wind 9 14400 < th dose independent rect. 13 2
667 644.46 humidity 60 14400 > th dose dependent rect. 1 8
670 644.60 humidity 50 14400 > th dose dependent rect. 3 5
691 645.11 humidity 60 14400 > th dose dependent rect. 20 1
700 645.32 humidity 60 14400 > th dose independent rect. 4 4
715 645.70 humidity 80 14400 < th dose independent rect. 5 1
732 646.17 humidity 50 14400 > th dose dependent rect. 20 13
749 646.62 humidity 80 14400 > th dose independent rect. 5 1
801 647.75 humidity 50 14400 < th dose dependent rect. 9 1
814 648.04 atmosphere 1005 10 < th dose independent rect. 14 11
817 648.08 atmosphere 1005 270 < th dose independent rect. 19 2
835 648.50 humidity 80 4320 > th dose dependent rect. 8 1
836 648.61 atmosphere 1005 30 < th dose dependent rect. 18 7
839 648.65 atmosphere 1000 10 < th dose dependent rect. 20 5
871 649.40 humidity 50 14400 > th dose dependent rect. 6 2
906 649.79 radiation 1 1440 > th dose independent rect. 9 1
908 649.83 wind 9 4320 > th dose dependent rect. 18 1
949 650.69 humidity 80 1440 < th dose independent rect. 23 3
971 650.95 humidity 80 1440 > th dose independent rect. 23 3