BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0952800 Os01g0952800|AK073385
(247 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56970.1 | chr3:21084204-21085094 REVERSE LENGTH=254 109 2e-24
AT2G41240.1 | chr2:17198331-17199320 REVERSE LENGTH=243 101 4e-22
AT5G04150.1 | chr5:1138559-1139476 REVERSE LENGTH=241 100 7e-22
AT3G56980.1 | chr3:21086612-21087494 REVERSE LENGTH=259 95 4e-20
AT5G51780.1 | chr5:21034879-21036446 FORWARD LENGTH=175 54 1e-07
AT4G25410.1 | chr4:12985772-12987149 FORWARD LENGTH=231 54 1e-07
AT5G51790.1 | chr5:21039762-21040594 FORWARD LENGTH=205 51 6e-07
AT4G25400.1 | chr4:12981295-12982335 FORWARD LENGTH=164 50 1e-06
AT5G53210.1 | chr5:21586606-21588941 REVERSE LENGTH=365 49 2e-06
AT3G06120.1 | chr3:1846531-1848016 FORWARD LENGTH=203 48 4e-06
AT4G01460.1 | chr4:621334-622697 FORWARD LENGTH=316 47 6e-06
AT1G71200.1 | chr1:26835973-26837308 REVERSE LENGTH=235 47 8e-06
>AT3G56970.1 | chr3:21084204-21085094 REVERSE LENGTH=254
Length = 253
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 105/188 (55%), Gaps = 37/188 (19%)
Query: 69 RKLSHNAYERDRRKQLNELYSSLRALLPDADHT-KLSIPTTVSRVLKYIPELQKQVENLE 127
+KL+HNA ERDRRK++N L+SSLR+ LP +D + KLSIP TVS+ LKYIPELQ+QV+ L
Sbjct: 72 KKLNHNASERDRRKKINTLFSSLRSCLPASDQSKKLSIPETVSKSLKYIPELQQQVKRLI 131
Query: 128 RKKKELTTTST--------TNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVS----- 174
+KK+E+ + +P + S L + VSAT + D E+MVQVS
Sbjct: 132 QKKEEILVRVSGQRDFELYDKQQPKAVASYLST------VSATRLGDNEVMVQVSSSKIH 185
Query: 175 --LLSNVAGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQ---RSEGTINEE 229
+SNV G + E +G + S+S G R FY++HLQ + IN
Sbjct: 186 NFSISNVLGGI----------EEDGFVLVDVSSSRSQGERLFYTLHLQVENMDDYKIN-- 233
Query: 230 CPAFCERL 237
C ER+
Sbjct: 234 CEELSERM 241
>AT2G41240.1 | chr2:17198331-17199320 REVERSE LENGTH=243
Length = 242
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 22/173 (12%)
Query: 69 RKLSHNAYERDRRKQLNELYSSLRALLPDADHTK-LSIPTTVSRVLKYIPELQKQVE--- 124
+KL+HNA ER+RRK++N ++SSLR+ LP + TK LS+ TVS+ LKYIPELQ+QV+
Sbjct: 62 KKLNHNASERERRKKINTMFSSLRSCLPPTNQTKKLSVSATVSQALKYIPELQEQVKKLM 121
Query: 125 --------NLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLL 176
+ ++ + T + + GV A VS+T +++ E+MVQ+S L
Sbjct: 122 KKKEELSFQISGQRDLVYTDQNSKSEEGVT-------SYASTVSSTRLSETEVMVQISSL 174
Query: 177 SNVAGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQRSEGTINEE 229
S + +E +GL + +S+S G R FYS+HLQ G +N E
Sbjct: 175 QTEKCS---FGNVLSGVEEDGLVLVGASSSRSHGERLFYSMHLQIKNGQVNSE 224
>AT5G04150.1 | chr5:1138559-1139476 REVERSE LENGTH=241
Length = 240
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 10/157 (6%)
Query: 69 RKLSHNAYERDRRKQLNELYSSLRALLPDADHT-KLSIPTTVSRVLKYIPELQKQVENLE 127
+KL+HNA ERDRR++LN LYSSLRALLP +D KLSIP TV+RV+KYIPE +++++ L
Sbjct: 66 KKLNHNASERDRRRKLNALYSSLRALLPLSDQKRKLSIPMTVARVVKYIPEQKQELQRLS 125
Query: 128 RKKKELTTTSTTNCKPGVLGSQLMSEGMAPI----VSATCINDMEIMVQVSLLSNVAGSV 183
R+K+EL + L ++ M + + ++A + D EI VQ++
Sbjct: 126 RRKEELLKRISRKTHQEQLRNKAMMDSIDSSSSQRIAANWLTDTEIAVQIA-----TSKW 180
Query: 184 LPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQ 220
+S + LE GL+ IS S+S R FY++HLQ
Sbjct: 181 TSVSDMLLRLEENGLNVISVSSSVSSTARIFYTLHLQ 217
>AT3G56980.1 | chr3:21086612-21087494 REVERSE LENGTH=259
Length = 258
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 22/163 (13%)
Query: 69 RKLSHNAYERDRRKQLNELYSSLRALLPDADHTK-LSIPTTVSRVLKYIPELQKQVENLE 127
+KL+HNA ERDRR+++N L+SSLR+ LP + +K LSIP TVSR LKYIPELQ+QV+ L
Sbjct: 77 KKLNHNASERDRRRKINSLFSSLRSCLPASGQSKKLSIPATVSRSLKYIPELQEQVKKLI 136
Query: 128 RKKK----ELTTTSTTNCK----PGVLGSQLMSEGMAPIVSATCINDMEIMVQV--SLLS 177
+KK+ +++ T C P + + + + VSAT + D E+MVQ+ S +
Sbjct: 137 KKKEELLVQISGQRNTECYVKQPPKAVANYIST------VSATRLGDNEVMVQISSSKIH 190
Query: 178 NVAGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQ 220
N + +S + LE + + S+S G R FY++HLQ
Sbjct: 191 NFS-----ISNVLSGLEEDRFVLVDMSSSRSQGERLFYTLHLQ 228
>AT5G51780.1 | chr5:21034879-21036446 FORWARD LENGTH=175
Length = 174
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 70 KLSHNAYERDRRKQLNELYSSLRALLP-DADHTKLSIPTTVSRVLKYIPELQKQVENLER 128
K+ H ER RR+++ LY+SLR+LLP K S V+ + YI LQ++++ L
Sbjct: 3 KMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSV 62
Query: 129 KKKELTTTSTTNCKPGVLGSQ--------LMSEGMAPIVSATCINDMEIMVQVSLLSNVA 180
++ +L S + +LGS M G +V C+ +EIM L S
Sbjct: 63 RRDDLMVLS----RGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIM----LSSRCC 114
Query: 181 GSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIH 218
G S ++VL GL + +S SS +R Y+I
Sbjct: 115 GGQPRFSSVLQVLSEYGLCLL-NSISSIVDDRLVYTIQ 151
>AT4G25410.1 | chr4:12985772-12987149 FORWARD LENGTH=231
Length = 230
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 81/154 (52%), Gaps = 11/154 (7%)
Query: 73 HNAYERDRRKQLNELYSSLRALLP-DADHTKLSIPTTVSRVLKYIPELQKQVENLERKKK 131
H ER RR+++ L+++LR LP K ++ V+ + +I + + +++ L ++
Sbjct: 47 HRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRD 106
Query: 132 ELTTTS----TTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLLSNVAG-SVLPL 186
EL+ + +N PG GS + A ++ ++ +E++V SN +G LPL
Sbjct: 107 ELSRETGQGYKSNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVS----SNSSGPEALPL 162
Query: 187 SKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQ 220
SK ++ ++ +GL +SS T+ +R ++I ++
Sbjct: 163 SKVLETIQEKGLEVMSSFTTR-VNDRLMHTIQVE 195
>AT5G51790.1 | chr5:21039762-21040594 FORWARD LENGTH=205
Length = 204
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 69 RKLSHNAYERDRRKQLNELYSSLRALLP-DADHTKLSIPTTVSRVLKYIPELQKQVENLE 127
+KL H ER RR+++ L++SLR+ LP K ++ V+ + +I + Q ++++L
Sbjct: 27 KKLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMSDHVNGAVSFIKDTQTRIKDLS 86
Query: 128 RKKKELT--TTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLLSNVAGSVLP 185
++ EL T+ GS A ++ C++ E++V SL S + P
Sbjct: 87 ARRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCVSGFEVVVS-SLASGLEA--WP 143
Query: 186 LSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQ 220
LS+ ++VL +GL ISS T+ R Y+I ++
Sbjct: 144 LSRVLEVLHGQGLEVISSLTAR-VNERLMYTIQVE 177
>AT4G25400.1 | chr4:12981295-12982335 FORWARD LENGTH=164
Length = 163
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 70 KLSHNAYERDRRKQLNELYSSLRALLP-DADHTKLSIPTTVSRVLKYIPELQKQVENLER 128
KL H E+ RR+++ LY+SLR+LLP + K S V + YI LQ+ ++++
Sbjct: 3 KLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDINS 62
Query: 129 KKKELTTTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLLSNVAGSVLPLSK 188
K+ +L S + + Q +E +V C+ +EI+ +S+L P S
Sbjct: 63 KRDDLVLLSGRSFRSS--NEQEWNEISNHVVIRPCLVGIEIV--LSILQT------PFSS 112
Query: 189 CIKVLENEGLHFISSSTSS 207
++VL GL+ + SS
Sbjct: 113 VLQVLREHGLYVLGYICSS 131
>AT5G53210.1 | chr5:21586606-21588941 REVERSE LENGTH=365
Length = 364
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 68 HRKLSHNAYERDRRKQLNELYSSLRALLPDADHTKLSIPTTVSRVLKYIPELQKQVENLE 127
+K+SH ER+RRKQ+NE + LR+L+P + + + V++YI ELQ+ +++LE
Sbjct: 99 QQKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLE 158
Query: 128 RKKKELT 134
KK+ T
Sbjct: 159 AKKQRKT 165
>AT3G06120.1 | chr3:1846531-1848016 FORWARD LENGTH=203
Length = 202
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 71 LSHNAYERDRRKQLNELYSSLRALLPDADHTKLSIPTTVSRVLKYIPELQKQVENLERKK 130
+SH A ER+RR+Q+NE SLR+L P + + + V+++I ELQ+ V+ LE KK
Sbjct: 1 MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKK 60
Query: 131 KELT 134
+ T
Sbjct: 61 RRKT 64
>AT4G01460.1 | chr4:621334-622697 FORWARD LENGTH=316
Length = 315
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 47/71 (66%)
Query: 68 HRKLSHNAYERDRRKQLNELYSSLRALLPDADHTKLSIPTTVSRVLKYIPELQKQVENLE 127
+++++H A ER+RR+Q+NE +SLR+L+P + + + V + +I EL++ +++LE
Sbjct: 112 NQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLE 171
Query: 128 RKKKELTTTST 138
+K++ T T
Sbjct: 172 AEKRKDGTDET 182
>AT1G71200.1 | chr1:26835973-26837308 REVERSE LENGTH=235
Length = 234
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 69 RKLSHNAYERDRRKQLNELYSSLRALLPD----ADHTKLSIPTTVSRVLKYIPELQKQVE 124
+K HNA ER RR +L+ Y +L LLPD + K S P+ + V+ YIP+LQ +V
Sbjct: 61 KKQDHNAKERLRRMRLHASYLTLGTLLPDHSSSSSKKKWSAPSIIDNVITYIPKLQNEVG 120
Query: 125 NLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLLSNVAGSVL 184
L +K++L P + ++ G + E +VQ+ L
Sbjct: 121 ELTLRKQKLVELERRG--PSIRAISVLELGES---------GYEAVVQICLKKENEDE-- 167
Query: 185 PLSKCIKVLENEGLHFISSSTSSGFGNRTF--YSIHLQRSE 223
S + V+E +GL +S+STS + Y+ H++ E
Sbjct: 168 -FSNLLHVMEVQGLSVLSASTSQVCREQRVVCYNFHVKMDE 207
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,407,226
Number of extensions: 152247
Number of successful extensions: 741
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 16
Length of query: 247
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 151
Effective length of database: 8,474,633
Effective search space: 1279669583
Effective search space used: 1279669583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)