Os01g0948100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ERCC4 domain containing protein.
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Os01g0948100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ERCC4 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.67 | 0.334 | 9.24 | 1.42 | 1.24 | 0.772 | -0.291 | -1.54 | 0.352 | 19 | 24.15 | 10 | -- | -- |
| 54.67 | 0.347 | 9.26 | 1.22 | 1.24 | 0.918 | -0.337 | -- | 0.312 | 19 | 24.15 | 10 | -- | -- |
| 50.82 | 0.335 | 9.24 | 1.43 | 1.24 | 0.775 | -- | -1.55 | 0.353 | 19 | 24.15 | 10 | -- | -- |
| 54.95 | 0.345 | 9.26 | 1.22 | 1.24 | 0.955 | -- | -- | 0.305 | 19 | 23.69 | 11 | -- | -- |
| 131.32 | 0.537 | 9.21 | 1.4 | -- | 0.856 | -- | -1.52 | 0.328 | -- | 23.75 | 4 | -- | -- |
| 66.7 | 0.383 | 9.3 | 1.01 | 1.25 | -- | -0.457 | -- | 0.161 | 19.5 | -- | -- | -- | -- |
| 67.27 | 0.384 | 9.3 | 1.02 | 1.25 | -- | -- | -- | 0.16 | 19.5 | -- | -- | -- | -- |
| 134.94 | 0.543 | 9.24 | 1.21 | -- | 1.06 | -- | -- | 0.281 | -- | 23.2 | 3 | -- | -- |
| 91.18 | 0.447 | 9.31 | -- | 1.23 | 0.473 | -- | -- | 0.107 | 19.3 | 23.69 | 11 | -- | -- |
| 150.75 | 0.574 | 9.27 | 0.997 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 94.51 | 0.455 | 9.32 | -- | 1.24 | -- | -- | -- | 0.047 | 19.5 | -- | -- | -- | -- |
| 170.81 | 0.611 | 9.28 | -- | -- | 0.636 | -- | -- | 0.1 | -- | 23.2 | 3 | -- | -- |
| 176.97 | 0.621 | 9.29 | -- | -- | -- | -- | -- | 0.0296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.83 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 20 |
| 11 | 50.32 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 12 | 50.33 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 15 | 50.53 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 24 | 50.80 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 27 | 50.85 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 28 | 50.87 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 29 | 50.88 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 30 | 50.89 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 31 | 50.90 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 36 | 50.94 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 38 | 50.95 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 40 | 51.03 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 44 | 51.17 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 68 | 51.59 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 17 |
| 71 | 51.67 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 72 | 51.67 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 75 | 51.68 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 79 | 51.72 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 80 | 51.72 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 85 | 51.78 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 86 | 51.79 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 89 | 51.82 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 106 | 51.86 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 108 | 51.89 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 110 | 51.89 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 137 | 51.97 | radiation | 1.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 148 | 52.00 | radiation | 1.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 163 | 52.04 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 22 |
| 167 | 52.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 169 | 52.05 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 22 |
| 170 | 52.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 202 | 52.10 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 235 | 52.17 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 236 | 52.17 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 237 | 52.17 | temperature | 30.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 240 | 52.18 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 284 | 52.29 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 300 | 52.31 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 315 | 52.33 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 327 | 52.34 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 12 |
| 331 | 52.34 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 19 |
| 336 | 52.34 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 343 | 52.35 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 17 |
| 383 | 52.44 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 14 |
| 385 | 52.44 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 15 |
| 391 | 52.44 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 24 | 19 |
| 393 | 52.44 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 20 |
| 412 | 52.45 | radiation | 1.0 | 4320 | < th | dose independent | no | NA | NA |
| 413 | 52.45 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 416 | 52.45 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 3 | 16 |
| 442 | 52.46 | radiation | 1.0 | 4320 | > th | dose independent | no | NA | NA |
| 507 | 52.48 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 615 | 52.59 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 631 | 52.61 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 637 | 52.62 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 638 | 52.62 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 657 | 52.65 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 678 | 52.67 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 722 | 52.73 | temperature | 25.0 | 10 | < th | dose dependent | sin | 17 | NA |
| 727 | 52.74 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 738 | 52.74 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 768 | 52.79 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 839 | 52.88 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 858 | 52.94 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 882 | 52.99 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 939 | 53.04 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 945 | 53.05 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 947 | 53.05 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 967 | 53.08 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 970 | 53.08 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 16 | 18 |