BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0948100 Os01g0948100|AK111411
(660 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30870.1 | chr4:15028586-15032461 FORWARD LENGTH=660 316 3e-86
AT5G39770.1 | chr5:15919241-15927549 REVERSE LENGTH=1273 219 4e-57
>AT4G30870.1 | chr4:15028586-15032461 FORWARD LENGTH=660
Length = 659
Score = 316 bits (809), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 168/329 (51%), Positives = 216/329 (65%), Gaps = 19/329 (5%)
Query: 340 GKTTTNYRFSDCSASISPRSSEGTFEMQSSSTMGIAEFNMLDNDTVCMDNSILAMPPRRS 399
G +R + ++++P SS + +++ S+ L +D +I +PP +
Sbjct: 341 GSRAKKFRSCNDGSTLNPCSSGSSHAVKACSSS-------LASDGTKGITNIPRLPPLQF 393
Query: 400 SKNFLEDYEVVLILDDRENF---GGRSRKTVDNIHSQFRVPVEIKHLPVGDGIWIARDRK 456
+ F E Y+V+LILDDRE F G RSR V+NI S+F + +E++ LPVGD IWIAR +
Sbjct: 394 GETFEEAYDVILILDDREKFATKGSRSRNIVENICSEFNIKIEVRRLPVGDCIWIARHKY 453
Query: 457 LHTEYVLDFIVERKNVADLCSSITDNRYKDQXXXXXXXXXXXXIYLVEGDPNPLDTSERI 516
L TEYVLDFI ERKNV D+ SSI DNRY+DQ IY++EGDPN D +E I
Sbjct: 454 LETEYVLDFIAERKNVDDMRSSIRDNRYRDQKLRLQRSGFKKLIYILEGDPNHSDAAESI 513
Query: 517 KTACFTTEILEGFDVQRTPGYAETVRTYGNLTHSITEYYSTHF-----STGANTSQVCLT 571
KTACFTTEILEGFDV RT G ET+R YG LT SI +YY S GA + C +
Sbjct: 514 KTACFTTEILEGFDVLRTHGLGETLRKYGYLTKSIYQYYKLRVNDNDQSKGAAS---CPS 570
Query: 572 YDEFTKKCDDLKKITVSDVFALQLMQVPQVTEEAALAVIGLYPTLFSLAKAYSMLDGDTH 631
+D F K+C DL K+T+SDVFA+QLMQVPQVTEE A+AV+ +YPTL SLA AYS L+ D
Sbjct: 571 FDSFVKRCQDLDKMTISDVFAIQLMQVPQVTEEIAIAVLDMYPTLLSLASAYSHLEADVS 630
Query: 632 AQEKMLKNKS-TLINAGASRNIFKLVWAE 659
AQE+ML+N+S +I A AS+NIFKLVW E
Sbjct: 631 AQEEMLRNRSNNVICASASKNIFKLVWGE 659
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 142/240 (59%), Gaps = 2/240 (0%)
Query: 9 KVHLRENEAVAQCVLEKWRSMEEKPGGLKENLAHTLYKSYRNVCAAKEPIRSLKDLYQIK 68
+V EN +A VL+K + EKP GL ENL T K YR+VC AK+PI +LKDL QIK
Sbjct: 6 RVLCPENRGLAAYVLQKKQEYAEKPKGLSENLERTFVKGYRSVCDAKDPINTLKDLSQIK 65
Query: 69 GVGKWVIRQLKGXXXXXXXXXXXXXXNXXXXXXXXXXXXXRYVPQKNSAAYAILITLHRE 128
G GKW+++ +KG RY+PQ+NS YA+LITLHR
Sbjct: 66 GFGKWMVKLMKGYFDTAVESSEQEDL-PDNRAGKKANGKKRYIPQRNSVGYALLITLHRR 124
Query: 129 TINGKSHMKKQELIDATEASGLSRSAIGPDKSKAKPGAFASSQKDWYTGWSCMKTLTSKG 188
T NGK M+KQELIDA +A+GLS + +GP+K K K G S+++WY+GWSCM TL KG
Sbjct: 125 TTNGKEFMRKQELIDAADANGLSHAPVGPEKGKGKAG-LGHSKREWYSGWSCMTTLIQKG 183
Query: 189 LVAKSGNPAKYMITEEGKSTALECLSRSGLDDHAAPLVINSAPDTSNASHKLNNICMTSF 248
LV KS NPAKYM+T EG+ A EC+ RSGL D L ++ T A N SF
Sbjct: 184 LVVKSSNPAKYMLTVEGREVANECILRSGLPDSVDILSVDEMDPTPQAKKTPNQNPTCSF 243
>AT5G39770.1 | chr5:15919241-15927549 REVERSE LENGTH=1273
Length = 1272
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/278 (46%), Positives = 164/278 (58%), Gaps = 42/278 (15%)
Query: 390 SILAMPPRRSSKNFLEDYEVVLILDDRENFGGRSRKTVDNIHSQFRVPVEIKHLPVGDGI 449
+I +PP R + F E Y+V+LILDDRE F + K +
Sbjct: 1009 TIPRLPPLRFGEAFEEVYDVILILDDREQFATKGHKYQQD-------------------- 1048
Query: 450 WIARDRKLHTEYVLDFIVERKNVADLCSSITDNRYKDQXXXXXXXXXXXXIYLVEGDPNP 509
EYVLDFIVERKNV D+ SSI DNRYKDQ IY++EGDPN
Sbjct: 1049 ----------EYVLDFIVERKNVDDMRSSIMDNRYKDQKLRLQRSGIKKLIYILEGDPNQ 1098
Query: 510 LDTSERIKTACFTTEILEGFDVQRTPGYAETVRTYGNLTHSITEYYSTHFSTGA-NTSQV 568
T+E IKTACFTTEILEGFDV RT G ET+R YG LT SI +YY + + +
Sbjct: 1099 SKTAESIKTACFTTEILEGFDVVRTNGLGETLRKYGYLTKSIYQYYKSLVNDDQRKVADS 1158
Query: 569 CLTYDEFTKKCDDLKKITVSDVFALQLMQVPQVTEEA---------ALAVIGLYPTLFSL 619
C +YD+F ++C DL K+T+SDVFA+QLMQV + + + A+AV+ Y TL SL
Sbjct: 1159 CPSYDDFVQRCPDLGKMTISDVFAIQLMQVLSLAKPSFGFLSATFFAIAVLDKYKTLRSL 1218
Query: 620 AKAYSMLDGDTHAQEKMLKNKS-TLINAGASRNIFKLV 656
A AYS LD + AQE+ML+N+S +I A AS+NI+KLV
Sbjct: 1219 ASAYSKLD-NVSAQEEMLRNQSNNVICASASKNIYKLV 1255
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 114/188 (60%), Gaps = 4/188 (2%)
Query: 30 EEKPGGLKENLAHTLYKSYRNVCAAKEPIRSLKDLYQIKGVGKWVIRQLKGXXXXXXXXX 89
+ KP GL E K+YRNVC AK+ I +LKDL +IKG GK++++ ++G
Sbjct: 759 DHKPKGLSEYQEMKFVKAYRNVCDAKDSIDTLKDLSKIKGFGKYMVKLMQGYFVTGAASS 818
Query: 90 XXXXXNXXXXXXXXXXXXXRYVPQKNSAAYAILITLHR-ETINGKSHMKKQELIDATEAS 148
Y PQ+N+AAYA L+TLHR +T NGK M+KQ+L+DA +AS
Sbjct: 819 EQEALPGNRAGKKAKGSEP-YKPQRNTAAYA-LLTLHRFKTANGKKLMRKQKLMDAADAS 876
Query: 149 GLSRSAIGPDKSKAKPGAFASSQKDWYTGWSCMKTLTSKGLVAKSGNPAKYMITEEGKST 208
GLS +I P+K K K G +S+++WY+GWSCM L KGLV K NPAKYM+T EG++
Sbjct: 877 GLSHVSIAPEKGKGKAG-LGTSKREWYSGWSCMSKLIEKGLVVKFSNPAKYMLTVEGRNV 935
Query: 209 ALECLSRS 216
A + RS
Sbjct: 936 ADDLDPRS 943
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,080,453
Number of extensions: 509060
Number of successful extensions: 894
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 6
Length of query: 660
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 555
Effective length of database: 8,227,889
Effective search space: 4566478395
Effective search space used: 4566478395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)