Os01g0939400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0939400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.6 | 0.16 | 10.4 | 0.151 | 0.28 | 0.625 | 0.0877 | 0.0343 | -0.0435 | 8.92 | 24.5 | 15 | -- | -- |
| 11.6 | 0.159 | 10.4 | 0.147 | 0.28 | 0.628 | 0.0901 | -- | -0.0446 | 8.91 | 24.5 | 14 | -- | -- |
| 11.63 | 0.159 | 10.4 | 0.156 | 0.279 | 0.624 | -- | 0.0567 | -0.0425 | 8.9 | 24.49 | 14 | -- | -- |
| 11.63 | 0.159 | 10.4 | 0.149 | 0.28 | 0.631 | -- | -- | -0.0451 | 8.87 | 24.5 | 14 | -- | -- |
| 15.69 | 0.185 | 10.5 | 0.156 | -- | 0.657 | -- | 0.224 | -0.0706 | -- | 22.29 | 8 | -- | -- |
| 17.52 | 0.196 | 10.4 | 0.242 | 0.374 | -- | 0.225 | -- | 0.0208 | 11.8 | -- | -- | -- | -- |
| 17.74 | 0.197 | 10.4 | 0.251 | 0.374 | -- | -- | -- | 0.0216 | 11.7 | -- | -- | -- | -- |
| 15.71 | 0.185 | 10.5 | 0.119 | -- | 0.673 | -- | -- | -0.0833 | -- | 22.01 | 8 | -- | -- |
| 12.15 | 0.162 | 10.5 | -- | 0.275 | 0.662 | -- | -- | -0.0911 | 8.71 | 23.07 | 17 | -- | -- |
| 26.52 | 0.241 | 10.4 | 0.241 | -- | -- | -- | -- | 0.0171 | -- | -- | -- | -- | -- |
| 19.4 | 0.206 | 10.4 | -- | 0.371 | -- | -- | -- | -0.00634 | 11.7 | -- | -- | -- | -- |
| 16.07 | 0.187 | 10.5 | -- | -- | 0.69 | -- | -- | -0.101 | -- | 21.93 | 7 | -- | -- |
| 28.05 | 0.247 | 10.4 | -- | -- | -- | -- | -- | -0.00956 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 9 | 11.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 33 | 11.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 34 | 11.47 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 38 | 11.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 48 | 11.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 72 | 11.65 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 73 | 11.66 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 75 | 11.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 76 | 11.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 80 | 11.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 84 | 11.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 104 | 11.72 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 113 | 11.73 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 115 | 11.73 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 123 | 11.74 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 144 | 11.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 155 | 11.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 208 | 11.81 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 212 | 11.82 | temperature | 20 | 30 | > th | dose dependent | sin | 22 | NA |
| 261 | 11.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 329 | 11.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 4 |
| 440 | 11.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 498 | 12.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 552 | 12.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 553 | 12.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 586 | 12.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 635 | 12.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 839 | 12.35 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 907 | 12.43 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |