BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0939400 Os01g0939400|AK107946
         (164 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13470.1  | chr5:4318562-4319720 FORWARD LENGTH=160             62   1e-10

>AT5G13470.1 | chr5:4318562-4319720 FORWARD LENGTH=160
          Length = 159

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 97  MMDSTSRKRESNGSAFQDPRS-KFPRVQSGQSRGARIAAGNTLVPPQLSGRSNVVTEDMT 155
           M +S  RKR+ +G+A   PR  K PR     S+      GN LVPPQL GRSNV TEDM+
Sbjct: 81  MAESALRKRDLSGNASSLPRRPKLPRGNLPHSKNYPETLGNVLVPPQLKGRSNVATEDMS 140

Query: 156 KLFVARRKE 164
           +LFV +R++
Sbjct: 141 RLFVKKRQD 149



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.126    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,179,163
Number of extensions: 53119
Number of successful extensions: 70
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 108 (46.2 bits)