Os01g0938100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem II protein PsbW, class I family protein.
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Os01g0938100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem II protein PsbW, class I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.69 | 0.516 | 13.8 | -1.6 | 2.5 | -1.07 | 2.55 | -1.38 | -0.984 | 7.73 | 54.17 | 904 | -- | -- |
| 122.83 | 0.516 | 13.8 | -1.7 | 2.48 | -1.11 | 2.08 | -- | -1 | 7.73 | 51 | 916 | -- | -- |
| 134.65 | 0.54 | 13.8 | -1.62 | 2.37 | -1.02 | -- | 0.0272 | -1 | 7.72 | 55 | 1004 | -- | -- |
| 134.62 | 0.54 | 13.8 | -1.65 | 2.37 | -1.03 | -- | -- | -1.01 | 7.73 | 53 | 1006 | -- | -- |
| 296.87 | 0.802 | 13.8 | -1.51 | -- | 1.81 | -- | -0.661 | -0.822 | -- | 64 | 524 | -- | -- |
| 141.4 | 0.557 | 13.8 | -1.64 | 2.15 | -- | 1.89 | -- | -0.972 | 7.33 | -- | -- | -- | -- |
| 151.06 | 0.576 | 13.8 | -1.6 | 2.15 | -- | -- | -- | -0.976 | 7.29 | -- | -- | -- | -- |
| 296.33 | 0.802 | 13.8 | -1.6 | -- | 1.71 | -- | -- | -0.826 | -- | 66.45 | 518 | -- | -- |
| 170.01 | 0.607 | 13.8 | -- | 2.14 | -1.96 | -- | -- | -0.953 | 7.34 | 11.36 | 47520 | -- | -- |
| 396.47 | 0.93 | 13.8 | -1.57 | -- | -- | -- | -- | -0.939 | -- | -- | -- | -- | -- |
| 218.75 | 0.692 | 13.7 | -- | 2.14 | -- | -- | -- | -0.797 | 7.34 | -- | -- | -- | -- |
| 363.06 | 0.887 | 13.8 | -- | -- | 1.75 | -- | -- | -0.66 | -- | 64.64 | 543 | -- | -- |
| 461.09 | 1 | 13.8 | -- | -- | -- | -- | -- | -0.766 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.24 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 2 | 117.68 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 3 | 117.70 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 5 | 117.91 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 6 | 117.91 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 8 | 117.95 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 9 | 117.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 10 | 118.02 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 13 | 118.09 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 15 | 118.19 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 17 | 118.21 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 20 | 118.25 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 23 | 118.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 37 | 118.59 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 47 | 118.69 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 55 | 118.75 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 61 | 118.80 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 75 | 119.00 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 88 | 119.16 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 94 | 119.20 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 107 | 119.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 132 | 119.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 133 | 119.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 141 | 119.59 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 150 | 119.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 176 | 119.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 179 | 119.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 206 | 120.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 213 | 120.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 214 | 120.10 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 215 | 120.10 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 257 | 120.35 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 261 | 120.37 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 270 | 120.41 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 313 | 120.59 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 10 |
| 392 | 120.87 | wind | 5.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 406 | 120.91 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 408 | 120.92 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 413 | 120.93 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 438 | 121.03 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 467 | 121.11 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 616 | 121.60 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 621 | 121.61 | wind | 1.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 635 | 121.64 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 655 | 121.69 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 722 | 121.85 | wind | 3.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 746 | 121.90 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 776 | 121.96 | wind | 3.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 792 | 122.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 793 | 122.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 798 | 122.01 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 799 | 122.01 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 802 | 122.01 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 805 | 122.02 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 878 | 122.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 883 | 122.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 927 | 122.26 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 941 | 122.29 | humidity | 60.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 959 | 122.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 979 | 122.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |