BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0938100 Os01g0938100|AF366557
         (97 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28660.2  | chr4:14150008-14150933 FORWARD LENGTH=199          166   2e-42

>AT4G28660.2 | chr4:14150008-14150933 FORWARD LENGTH=199
          Length = 198

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 89/97 (91%)

Query: 1   PDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGK 60
           PDV+LT+SRDG+NG+A+F+FDQPSVFDSS E+G+ITG YMID+EGV+QS DV+A+FVNGK
Sbjct: 101 PDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGK 160

Query: 61  PALIEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 97
           P  I AK++MR+P+EWDRFMRFMERYS  NGLQFVKK
Sbjct: 161 PEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVKK 197



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,045,738
Number of extensions: 73487
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 97
Length of database: 11,106,569
Length adjustment: 67
Effective length of query: 30
Effective length of database: 9,269,697
Effective search space: 278090910
Effective search space used: 278090910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)