Os01g0934400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem II oxygen evolving complex protein PsbP family protein.
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Os01g0934400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem II oxygen evolving complex protein PsbP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.3 | 0.568 | 11.1 | -1.77 | 3.38 | -0.973 | -2.51 | 0.683 | -1.31 | 6.4 | 19.57 | 1317 | -- | -- |
| 146.73 | 0.564 | 11.1 | -1.74 | 3.43 | -0.961 | -2.46 | -- | -1.28 | 6.42 | 19.67 | 1268 | -- | -- |
| 161.63 | 0.592 | 11.1 | -1.8 | 3.39 | -0.97 | -- | 0.472 | -1.31 | 6.39 | 19.67 | 1297 | -- | -- |
| 161.86 | 0.593 | 11.1 | -1.73 | 3.43 | -0.967 | -- | -- | -1.28 | 6.41 | 19.67 | 1267 | -- | -- |
| 739.33 | 1.27 | 11.1 | -1.79 | -- | -0.967 | -- | 0.588 | -1.19 | -- | 26.44 | 1391 | -- | -- |
| 179.49 | 0.628 | 11 | -1.64 | 3.36 | -- | -2.37 | -- | -1.08 | 6.19 | -- | -- | -- | -- |
| 193.27 | 0.651 | 11 | -1.67 | 3.35 | -- | -- | -- | -1.07 | 6.15 | -- | -- | -- | -- |
| 739.19 | 1.27 | 11.1 | -1.78 | -- | -0.97 | -- | -- | -1.2 | -- | 26.41 | 1390 | -- | -- |
| 236.76 | 0.717 | 11 | -- | 3.4 | -1.24 | -- | -- | -1.15 | 6.27 | 19.9 | 7093 | -- | -- |
| 775.19 | 1.3 | 11.1 | -1.57 | -- | -- | -- | -- | -1 | -- | -- | -- | -- | -- |
| 266.47 | 0.764 | 11 | -- | 3.33 | -- | -- | -- | -0.889 | 6.17 | -- | -- | -- | -- |
| 804.28 | 1.32 | 11.1 | -- | -- | -1.34 | -- | -- | -1.23 | -- | 19.97 | 8643 | -- | -- |
| 840.43 | 1.35 | 11 | -- | -- | -- | -- | -- | -0.826 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.54 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 146.01 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 148.36 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 7 | 149.13 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 9 | 149.80 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 11 | 150.12 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 20 | 150.59 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 21 | 150.60 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 22 | 150.60 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 24 | 150.62 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 33 | 150.69 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 37 | 150.80 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 40 | 150.82 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 43 | 150.83 | radiation | 20.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 50 | 150.85 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 61 | 150.88 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 62 | 150.88 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 100 | 150.92 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 104 | 150.92 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 110 | 150.92 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 170 | 151.26 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 174 | 151.32 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 175 | 151.33 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 182 | 151.38 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 276 | 152.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 293 | 152.49 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 301 | 152.63 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 308 | 152.72 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 325 | 152.87 | wind | 5.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 346 | 152.99 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 394 | 153.11 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 405 | 153.25 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 415 | 153.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 417 | 153.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 434 | 153.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 435 | 153.43 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 436 | 153.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 438 | 153.45 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 444 | 153.50 | radiation | 10.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 476 | 153.57 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 477 | 153.57 | wind | 7.0 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 489 | 153.57 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 563 | 153.63 | wind | 7.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 594 | 153.67 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 667 | 153.73 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 693 | 153.75 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 737 | 153.82 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 738 | 153.82 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 774 | 153.85 | radiation | 10.0 | 1440 | > th | dose dependent | no | NA | NA |
| 856 | 153.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 885 | 153.97 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 24 | 14 |
| 886 | 153.97 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 22 | 16 |
| 887 | 153.98 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 949 | 154.08 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 954 | 154.09 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 4 |