BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0934400 Os01g0934400|AK058904
         (180 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05410.2  | chr3:1554783-1561456 FORWARD LENGTH=281            236   5e-63
AT3G55330.1  | chr3:20514031-20515275 REVERSE LENGTH=231           55   2e-08

>AT3G05410.2 | chr3:1554783-1561456 FORWARD LENGTH=281
          Length = 280

 Score =  236 bits (602), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 110/178 (61%), Positives = 140/178 (78%), Gaps = 4/178 (2%)

Query: 1   EFIYPASWVGDQTLLYRGAKRAELQRSLDPPPLANGRSPSRPRNISEPVAAFGPPGSSGE 60
           EFIYPA+WVGDQTLLYR A+++E + SLD PP  N    SR +N++EPV AFGPPGS+GE
Sbjct: 107 EFIYPATWVGDQTLLYRAAEKSERENSLDLPPARN----SRRKNVNEPVVAFGPPGSTGE 162

Query: 61  LNVSVIVSPVPQDFSIEAFGGPKDVGEVVLRRIAKTKRGADINATLLDAALREDPANNVK 120
           LNVSVIVSPV   FSIEAFGGPK+VGE ++R +  + + AD+  TLL++++R+D   N+K
Sbjct: 163 LNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQDSERNLK 222

Query: 121 YYKLEFRVESPSFRRRNVAVCCAKDGKLYTLNAQAPESAWKAVRKEFLAMADSFSLVA 178
           YY+LEF+VESP FRR NVAVCCA  G+LYTLNAQAPESAW  V+ E    A SF++++
Sbjct: 223 YYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSFNIIS 280



>AT3G55330.1 | chr3:20514031-20515275 REVERSE LENGTH=231
          Length = 230

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)

Query: 62  NVSVIVSPVPQDFSIEAFGGPKDVGEVVLRRIAKTKRGADINATLLDAALREDPANNVKY 121
           +VSV + P  +  +I+ FG PK + E +++++       +   TL+DA+  E   +   Y
Sbjct: 120 SVSVNLVPTSKQ-TIKEFGPPKQIAETLIKKVLAP---PNQKTTLIDAS--EHDVDGKTY 173

Query: 122 YKLEFRVESPSFRRRNVAVCCAKDGKLYTLNAQAPESAWKAVRKEFLAMADSFSL 176
           Y+ EF V++ ++ R  +      +G  YTL   A E  W+ ++     + DSF +
Sbjct: 174 YQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,150,980
Number of extensions: 181947
Number of successful extensions: 543
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)