Os01g0932000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0932000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 273.26 | 0.777 | 3.29 | -0.0638 | 0.284 | -0.462 | -0.17 | -0.544 | -0.488 | 4.64 | 24.88 | 100 | -- | -- |
| 274.28 | 0.771 | 3.29 | -0.216 | 0.294 | -0.474 | -0.472 | -- | -0.527 | 4.48 | 24.9 | 100 | -- | -- |
| 273.32 | 0.77 | 3.29 | -0.0472 | 0.284 | -0.463 | -- | -0.6 | -0.483 | 4.6 | 24.89 | 100 | -- | -- |
| 274.7 | 0.772 | 3.31 | -0.23 | 0.293 | -0.499 | -- | -- | -0.552 | 4.58 | 24.83 | 100 | -- | -- |
| 276.74 | 0.775 | 3.28 | -0.0338 | -- | -0.371 | -- | -0.56 | -0.481 | -- | 24.83 | 98 | -- | -- |
| 288.12 | 0.796 | 3.25 | -0.0936 | 0.0318 | -- | 0.615 | -- | -0.284 | 16 | -- | -- | -- | -- |
| 288.9 | 0.796 | 3.25 | -0.0856 | 0.0772 | -- | -- | -- | -0.281 | 11.5 | -- | -- | -- | -- |
| 278.04 | 0.777 | 3.29 | -0.185 | -- | -0.373 | -- | -- | -0.472 | -- | 24.83 | 98 | -- | -- |
| 276.05 | 0.774 | 3.3 | -- | 0.271 | -0.474 | -- | -- | -0.517 | 4.52 | 24.8 | 100 | -- | -- |
| 289.27 | 0.795 | 3.25 | -0.0877 | -- | -- | -- | -- | -0.281 | -- | -- | -- | -- | -- |
| 289.09 | 0.795 | 3.24 | -- | 0.0782 | -- | -- | -- | -0.271 | 11.6 | -- | -- | -- | -- |
| 278.93 | 0.778 | 3.29 | -- | -- | -0.359 | -- | -- | -0.451 | -- | 24.87 | 98 | -- | -- |
| 289.47 | 0.794 | 3.25 | -- | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.47 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 2 | 271.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 3 | 272.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 6 | 272.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 7 | 272.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 13 | 272.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 17 | 273.14 | temperature | 25 | 90 | > th | dose independent | rect. | 18 | 23 |
| 18 | 273.17 | temperature | 25 | 90 | < th | dose independent | rect. | 20 | 23 |
| 19 | 273.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 20 |
| 22 | 273.23 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 23 |
| 29 | 273.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 30 | 273.39 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 31 | 273.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 37 | 273.51 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 23 |
| 38 | 273.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 47 | 273.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 20 |
| 49 | 273.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 20 |
| 51 | 273.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 53 | 273.73 | temperature | 25 | 90 | > th | dose independent | rect. | 18 | 20 |
| 54 | 273.73 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 22 |
| 57 | 273.77 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 23 |
| 59 | 273.79 | temperature | 25 | 90 | < th | dose independent | rect. | 8 | 23 |
| 68 | 273.95 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 19 |
| 71 | 273.96 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 23 |
| 75 | 273.98 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 23 |
| 80 | 274.00 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |
| 82 | 274.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 101 | 274.15 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 102 | 274.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 105 | 274.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 114 | 274.30 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 116 | 274.32 | temperature | 25 | 90 | > th | dose independent | rect. | 22 | 23 |
| 125 | 274.38 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 23 |
| 129 | 274.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 134 | 274.46 | temperature | 25 | 90 | > th | dose independent | no | NA | NA |
| 148 | 274.55 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 23 |
| 162 | 274.66 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 23 |
| 171 | 274.75 | temperature | 25 | 90 | > th | dose independent | rect. | 11 | 23 |
| 194 | 274.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 199 | 274.89 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 201 | 274.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 214 | 274.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 220 | 274.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 221 | 274.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 229 | 274.99 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 234 | 274.99 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 242 | 275.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 252 | 275.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 261 | 275.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 286 | 275.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 287 | 275.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 288 | 275.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 298 | 275.19 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 17 | 6 |
| 314 | 275.21 | temperature | 25 | 90 | < th | dose independent | rect. | 20 | 17 |
| 362 | 275.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 413 | 275.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 452 | 275.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 474 | 275.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 476 | 275.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 510 | 275.51 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 511 | 275.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 526 | 275.52 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 528 | 275.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 553 | 275.56 | radiation | 10 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 586 | 275.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 620 | 275.63 | temperature | 10 | 1440 | > th | dose dependent | sin | 8 | NA |
| 650 | 275.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 693 | 275.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 694 | 275.72 | humidity | 90 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 705 | 275.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 22 |
| 724 | 275.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 778 | 275.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 810 | 275.83 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 811 | 275.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 846 | 275.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 904 | 275.91 | radiation | 10 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 920 | 275.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 979 | 275.95 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 16 | 23 |