Os01g0927900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aspartate kinase precursor (EC 2.7.2.4).
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Os01g0927900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aspartate kinase precursor (EC 2.7.2.4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.52 | 0.242 | 11 | -0.533 | 0.309 | -2.23 | 0.07 | 0.896 | -0.147 | 19.5 | 29.5 | 693 | -- | -- |
| 27.27 | 0.243 | 11 | -0.413 | 0.311 | -2.28 | -0.171 | -- | -0.122 | 19.2 | 29.09 | 706 | -- | -- |
| 26.45 | 0.24 | 11 | -0.526 | 0.276 | -2.26 | -- | 0.794 | -0.15 | 20.1 | 29.39 | 654 | -- | -- |
| 27.11 | 0.242 | 11 | -0.35 | 0.29 | -2.25 | -- | -- | -0.107 | 20.4 | 29.04 | 625 | -- | -- |
| 30 | 0.255 | 11.1 | -0.592 | -- | -2.4 | -- | 0.883 | -0.174 | -- | 29.8 | 631 | -- | -- |
| 95.93 | 0.459 | 10.9 | 0.247 | 0.824 | -- | -0.00727 | -- | 0.35 | 20.2 | -- | -- | -- | -- |
| 95.93 | 0.459 | 10.9 | 0.247 | 0.824 | -- | -- | -- | 0.35 | 20.2 | -- | -- | -- | -- |
| 30.53 | 0.257 | 11 | -0.407 | -- | -2.47 | -- | -- | -0.152 | -- | 29.6 | 629 | -- | -- |
| 30.1 | 0.256 | 11 | -- | 0.322 | -2.08 | -- | -- | -0.0548 | 20.1 | 29.16 | 644 | -- | -- |
| 133.31 | 0.54 | 10.9 | 0.241 | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
| 97.54 | 0.462 | 10.9 | -- | 0.823 | -- | -- | -- | 0.322 | 20.2 | -- | -- | -- | -- |
| 34.66 | 0.274 | 11 | -- | -- | -2.35 | -- | -- | -0.0777 | -- | 29.86 | 635 | -- | -- |
| 134.84 | 0.542 | 10.9 | -- | -- | -- | -- | -- | 0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 4 | 26.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 11 | 26.71 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 14 | 26.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 15 | 26.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 27 | 27.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 62 | 28.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 71 | 28.67 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 73 | 28.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 76 | 28.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 78 | 28.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 103 | 29.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 124 | 29.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 126 | 29.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 155 | 29.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 175 | 29.91 | temperature | 30 | 1440 | < th | dose dependent | sin | 22 | NA |
| 213 | 30.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 443 | 31.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 20 |
| 785 | 31.87 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 846 | 32.01 | temperature | 10 | 1440 | > th | dose dependent | sin | 1 | NA |
| 911 | 32.13 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 925 | 32.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 2 |