Os01g0923000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0923000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.79 | 0.723 | 6.74 | 1.5 | 0.505 | -2.66 | 1.47 | 2.35 | 0.898 | 20.3 | 1.899 | 37 | 20 | -- |
| 245.56 | 0.735 | 6.75 | 1.46 | 0.793 | -2.28 | -1.48 | -- | 0.874 | 23.1 | 2.251 | 36 | 20.1 | -- |
| 239.23 | 0.72 | 6.74 | 1.48 | 0.583 | -2.57 | -- | 1.5 | 0.918 | 21.1 | 2.26 | 38 | 20.2 | -- |
| 249.3 | 0.735 | 6.73 | 1.48 | 0.878 | -2.29 | -- | -- | 0.941 | 21.5 | 2.89 | 38 | 20.1 | -- |
| 250.82 | 0.738 | 6.77 | 1.39 | -- | -2.84 | -- | 1.66 | 0.973 | -- | 2.02 | 42 | 20.4 | -- |
| 316.62 | 0.834 | 6.82 | 1.45 | 3.24 | -- | -1.37 | -- | 0.82 | 22.9 | -- | -- | -- | -- |
| 324.53 | 0.844 | 6.82 | 1.51 | 3.25 | -- | -- | -- | 0.824 | 22.9 | -- | -- | -- | -- |
| 258.94 | 0.749 | 6.72 | 1.54 | -- | -2.95 | -- | -- | 0.982 | -- | 1.892 | 42 | 20.6 | -- |
| 306.61 | 0.816 | 6.78 | -- | 0.888 | -2.31 | -- | -- | 0.793 | 21.8 | 3.178 | 36 | 20.2 | -- |
| 978.23 | 1.46 | 6.74 | 1.58 | -- | -- | -- | -- | 0.846 | -- | -- | -- | -- | -- |
| 384.6 | 0.917 | 6.86 | -- | 3.26 | -- | -- | -- | 0.656 | 22.9 | -- | -- | -- | -- |
| 317.28 | 0.83 | 6.72 | -- | -- | -2.96 | -- | -- | 0.81 | -- | 2.251 | 40 | 20.4 | -- |
| 1043.91 | 1.51 | 6.78 | -- | -- | -- | -- | -- | 0.671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 240.87 | radiation | 1 | 30 | > th | dose independent | sin | 2 | NA |
| 2 | 242.15 | radiation | 1 | 30 | < th | dose independent | sin | 2 | NA |
| 3 | 242.74 | radiation | 20 | 30 | < th | dose dependent | rect. | 1 | 16 |
| 4 | 243.12 | temperature | 25 | 30 | < th | dose independent | rect. | 12 | 20 |
| 7 | 243.46 | humidity | 50 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 8 | 243.49 | radiation | 10 | 30 | < th | dose dependent | sin | 3 | NA |
| 12 | 243.79 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 20 | 244.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 21 | 245.15 | radiation | 1 | 270 | < th | dose independent | rect. | 21 | 22 |
| 29 | 245.74 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 20 |
| 36 | 246.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 43 | 247.29 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 61 | 248.27 | humidity | 50 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 64 | 248.42 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 66 | 248.58 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 17 |
| 72 | 249.00 | radiation | 1 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 91 | 249.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 117 | 250.76 | radiation | 1 | 30 | < th | dose independent | rect. | 3 | 15 |
| 128 | 251.01 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 134 | 251.30 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 160 | 252.30 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 161 | 252.38 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 163 | 252.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 8 |
| 190 | 253.11 | humidity | 60 | 270 | > th | dose independent | rect. | 24 | 16 |
| 213 | 253.83 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 17 |
| 222 | 254.02 | humidity | 60 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 232 | 254.14 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 238 | 254.24 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 242 | 254.33 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 248 | 254.43 | humidity | 60 | 270 | > th | dose independent | rect. | 23 | 18 |
| 249 | 254.47 | humidity | 70 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 254 | 254.65 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 325 | 255.79 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 328 | 255.82 | radiation | 1 | 30 | > th | dose independent | rect. | 18 | 20 |
| 358 | 256.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 373 | 256.67 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 380 | 256.75 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 9 |
| 407 | 256.95 | humidity | 60 | 90 | > th | dose independent | rect. | 12 | 7 |
| 414 | 257.06 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 426 | 257.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 438 | 257.42 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 443 | 257.46 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 447 | 257.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 463 | 257.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 494 | 257.94 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 6 |
| 495 | 257.94 | radiation | 1 | 270 | > th | dose independent | rect. | 16 | 22 |
| 570 | 258.66 | humidity | 80 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 579 | 258.73 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 596 | 258.89 | humidity | 60 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 617 | 259.15 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 621 | 259.20 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 625 | 259.21 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 635 | 259.30 | humidity | 80 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 692 | 259.80 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 18 |
| 714 | 259.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 721 | 260.01 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 739 | 260.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 742 | 260.17 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 19 |
| 749 | 260.25 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 12 |
| 750 | 260.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 761 | 260.35 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 764 | 260.38 | humidity | 90 | 90 | < th | dose independent | rect. | 19 | 17 |
| 792 | 260.61 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 21 |
| 798 | 260.66 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 810 | 260.76 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 16 |
| 855 | 260.99 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 19 |
| 861 | 261.05 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 16 |
| 870 | 261.12 | humidity | 80 | 1440 | < th | dose dependent | rect. | 24 | 13 |
| 875 | 261.14 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 881 | 261.18 | humidity | 60 | 270 | > th | dose independent | rect. | 12 | 17 |
| 885 | 261.19 | humidity | 80 | 1440 | < th | dose dependent | rect. | 3 | 10 |
| 951 | 261.53 | humidity | 50 | 10 | > th | dose dependent | sin | 6 | NA |