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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0915000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF506, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.7 (0.0684) R2 : 0.616
β1 : -3.81 (0.249) R2dD : 0.206 R2D : 0.215
β2 : 2.95 (0.295) R2dC : 0.279 R2C : -0.561
β3 : -4.6 (0.258) R2dE : 0.878 R2E : 0.0651
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.2 (0.566) R2dD*E : 0.0464 R2D*E : 0.032
γ1 : 0.624 (0.145) R2dN8 : 0.021 R2N8 : 0.0472
σ : 1.27
deviance : 740.41
__
_____
C
peak time of C : 22.6
E
wheather : radiation
threshold : 0.04
memory length : 124
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.94
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
740.46 1.28 5.7 -3.84 3 -4.64 -0.45 4.56 0.618 22.6 0.0007256 125 6.92 --
760.15 1.28 5.67 -3.47 3.21 -4.99 3.92 -- 0.601 23.3 0.02638 128 6.48 --
740.41 1.27 5.7 -3.81 2.95 -4.6 -- 4.2 0.624 22.6 0.04 124 6.94 --
828.22 1.34 5.69 -3.76 2.93 -4.64 -- -- 0.663 22.8 0.03869 130 6.91 --
868.67 1.37 5.61 -3.44 -- -2.58 -- 4.07 0.615 -- 0.03962 153 5.63 --
980.77 1.47 5.54 -3.42 2.71 -- -3.51 -- 0.927 14.4 -- -- -- --
1023.37 1.5 5.56 -3.51 2.73 -- -- -- 0.909 14.7 -- -- -- --
937.27 1.43 5.6 -3.59 -- -2.58 -- -- 0.771 -- 0.02765 153 5.19 --
1189.47 1.61 5.58 -- 2.79 -4.53 -- -- 1.1 22.8 0.3602 132 6.66 --
1456.98 1.78 5.58 -3.63 -- -- -- -- 0.841 -- -- -- -- --
1348.28 1.72 5.47 -- 2.79 -- -- -- 1.3 14.7 -- -- -- --
1278.91 1.67 5.53 -- -- -2.6 -- -- 1.14 -- 1.326e-06 142 4.46 --
1804.02 1.98 5.49 -- -- -- -- -- 1.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 761.03 radiation 1.0 90 < th dose dependent rect. 19 12
2 761.70 radiation 1.0 90 < th dose dependent rect. 19 16
7 763.81 wind 7.0 90 < th dose independent rect. 19 10
9 767.31 precipitation 0.1 90 < th dose independent rect. 5 14
10 767.31 precipitation 0.1 90 < th dose dependent rect. 5 14
13 770.46 radiation 1.0 90 < th dose independent rect. 19 12
20 771.12 radiation 1.0 90 < th dose independent rect. 19 10
22 771.13 temperature 10.0 90 > th dose independent rect. 19 10
23 771.13 temperature 30.0 90 < th dose independent rect. 19 10
24 771.13 humidity 50.0 90 > th dose independent rect. 19 10
26 771.13 atmosphere 995.0 90 > th dose independent rect. 19 10
30 771.13 temperature 10.0 90 > th dose independent rect. 5 14
31 771.13 atmosphere 1015.0 90 < th dose independent rect. 5 14
32 771.16 radiation 40.0 90 < th dose dependent rect. 15 4
36 775.86 wind 9.0 90 < th dose independent rect. 5 14
37 776.26 precipitation 0.1 90 < th dose independent rect. 19 10
38 776.26 precipitation 0.1 90 < th dose dependent rect. 19 10
39 776.32 precipitation 0.1 90 < th dose independent rect. 15 4
40 776.32 precipitation 0.1 90 < th dose dependent rect. 15 4
41 776.53 temperature 10.0 270 > th dose dependent rect. 15 2
42 777.07 radiation 30.0 90 < th dose independent rect. 15 4
43 777.82 humidity 90.0 270 < th dose independent rect. 15 2
44 777.86 wind 1.0 90 > th dose independent rect. 15 4
46 778.80 atmosphere 995.0 90 > th dose dependent rect. 19 9
47 778.82 radiation 10.0 10 < th dose dependent rect. 20 10
50 779.21 temperature 20.0 270 > th dose independent rect. 1 7
51 780.21 temperature 10.0 90 > th dose independent rect. 15 4
53 780.21 atmosphere 1010.0 90 < th dose independent rect. 15 4
55 780.21 temperature 10.0 90 > th dose independent rect. 19 20
56 780.65 radiation 1.0 90 < th dose independent rect. 19 16
57 780.69 radiation 40.0 270 < th dose independent rect. 15 2
59 780.85 precipitation 0.1 270 < th dose independent rect. 15 2
60 780.85 precipitation 0.1 270 < th dose dependent rect. 15 2
61 780.86 radiation 10.0 10 < th dose dependent rect. 6 14
63 781.29 radiation 1.0 270 < th dose independent rect. 17 10
64 781.33 radiation 1.0 270 < th dose dependent rect. 17 10
66 781.43 wind 1.0 270 > th dose independent rect. 15 2
70 781.72 temperature 10.0 90 > th dose dependent rect. 15 4
75 782.40 temperature 10.0 270 > th dose independent rect. 15 2
77 782.40 atmosphere 1010.0 270 < th dose independent rect. 15 2
79 782.40 temperature 10.0 270 > th dose independent rect. 17 22
99 782.64 atmosphere 995.0 90 > th dose independent rect. 19 20
100 782.71 atmosphere 995.0 90 > th dose independent rect. 5 14
104 783.60 wind 9.0 90 < th dose independent rect. 15 4
106 783.91 humidity 90.0 90 < th dose independent rect. 15 4
107 784.28 wind 9.0 90 < th dose independent rect. 19 20
109 784.35 atmosphere 995.0 90 > th dose independent rect. 15 4
110 784.35 wind 9.0 270 < th dose independent rect. 17 22
111 784.43 radiation 1.0 90 < th dose dependent sin 12 NA
116 784.91 temperature 10.0 10 > th dose dependent rect. 16 4
124 785.73 precipitation 0.1 90 < th dose independent rect. 19 20
125 785.73 precipitation 0.1 90 < th dose dependent rect. 19 20
127 786.20 atmosphere 995.0 270 > th dose independent rect. 17 22
128 786.21 temperature 30.0 270 < th dose independent rect. 17 10
132 786.55 radiation 1.0 270 > th dose independent rect. 15 2
141 786.96 radiation 40.0 10 < th dose dependent rect. 14 6
142 787.02 radiation 1.0 270 > th dose independent rect. 14 16
145 787.45 wind 9.0 270 < th dose independent rect. 15 2
153 788.35 wind 1.0 90 > th dose independent rect. 5 14
155 788.67 humidity 50.0 270 > th dose independent rect. 17 22
176 790.53 temperature 10.0 90 > th dose dependent rect. 4 15
183 790.81 atmosphere 995.0 90 > th dose dependent rect. 15 4
186 790.92 radiation 30.0 30 < th dose independent rect. 14 6
229 792.49 humidity 50.0 90 > th dose independent rect. 19 20
248 793.55 precipitation 0.1 270 < th dose independent rect. 17 22
250 793.55 precipitation 0.1 270 < th dose dependent rect. 17 22
262 794.39 atmosphere 995.0 270 > th dose independent rect. 15 2
263 794.56 temperature 15.0 270 > th dose dependent rect. 1 7
268 794.79 radiation 1.0 10 < th dose independent rect. 20 11
279 795.35 radiation 10.0 10 < th dose independent rect. 6 14
283 795.57 radiation 1.0 270 > th dose independent rect. 14 5
293 795.69 radiation 1.0 270 < th dose dependent rect. 5 22
312 796.27 wind 1.0 90 > th dose independent rect. 19 9
322 796.67 temperature 10.0 270 > th dose dependent rect. 14 17
336 797.48 temperature 10.0 10 > th dose independent rect. 15 5
338 797.48 atmosphere 1010.0 10 < th dose independent rect. 15 5
340 797.48 temperature 10.0 10 > th dose independent rect. 20 19
341 797.48 atmosphere 995.0 10 > th dose independent rect. 20 19
348 797.80 atmosphere 995.0 10 > th dose dependent rect. 20 9
363 798.82 radiation 1.0 270 > th dose independent sin 14 NA
368 798.98 wind 9.0 90 < th dose dependent rect. 16 3
376 799.08 radiation 1.0 270 < th dose independent sin 14 NA
401 799.96 wind 1.0 270 > th dose dependent rect. 15 2
403 800.03 wind 7.0 10 < th dose independent rect. 20 9
420 800.62 temperature 10.0 1440 > th dose independent rect. 16 5
423 800.62 temperature 10.0 1440 > th dose independent rect. 21 19
443 800.97 atmosphere 995.0 10 > th dose independent rect. 15 5
444 801.08 atmosphere 995.0 270 > th dose dependent rect. 15 1
456 801.25 radiation 1.0 90 < th dose independent sin 12 NA
460 801.32 wind 9.0 10 < th dose independent rect. 20 19
481 802.27 humidity 90.0 10 < th dose independent rect. 16 4
495 802.72 atmosphere 1000.0 10 > th dose independent rect. 20 9
510 803.38 precipitation 0.1 10 < th dose independent rect. 5 15
511 803.38 precipitation 0.1 10 < th dose dependent rect. 5 15
515 803.56 temperature 10.0 10 > th dose dependent rect. 5 15
517 803.77 atmosphere 1015.0 90 < th dose independent rect. 19 20
545 804.81 temperature 10.0 10 > th dose independent rect. 20 9
546 804.81 temperature 30.0 10 < th dose independent rect. 20 9
547 804.81 humidity 50.0 10 > th dose independent rect. 20 9
556 804.81 temperature 10.0 10 > th dose independent rect. 5 15
558 804.81 atmosphere 1015.0 10 < th dose independent rect. 5 15
573 805.10 precipitation 0.1 10 < th dose independent rect. 20 9
574 805.10 precipitation 0.1 10 < th dose dependent rect. 20 9
625 806.60 atmosphere 995.0 10 > th dose dependent rect. 15 5
648 807.19 radiation 1.0 270 > th dose dependent rect. 15 16
711 809.01 atmosphere 995.0 10 > th dose independent rect. 5 15
722 809.39 wind 9.0 90 < th dose dependent rect. 19 9
724 809.52 wind 1.0 10 > th dose independent rect. 6 14
766 810.70 radiation 1.0 270 < th dose independent rect. 6 21
788 811.04 temperature 10.0 1440 > th dose independent rect. 21 8
791 811.04 temperature 30.0 1440 < th dose independent rect. 21 8
795 811.04 humidity 50.0 1440 > th dose independent rect. 21 8
801 811.04 atmosphere 995.0 1440 > th dose independent rect. 21 8
802 811.04 radiation 20.0 1440 < th dose independent rect. 21 8
814 811.04 temperature 10.0 1440 > th dose independent rect. 5 16
829 811.35 radiation 1.0 270 > th dose dependent rect. 15 2
844 811.69 radiation 1.0 270 < th dose independent rect. 9 18
893 812.39 radiation 1.0 270 < th dose dependent rect. 9 18
900 812.43 temperature 30.0 90 < th dose independent rect. 19 20
926 812.91 wind 9.0 10 < th dose independent rect. 5 15
955 812.96 wind 1.0 270 > th dose dependent rect. 14 4
985 813.85 atmosphere 1015.0 10 < th dose independent rect. 20 19