BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0915000 Os01g0915000|AK107951
(293 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07350.1 | chr3:2347674-2348570 FORWARD LENGTH=299 89 3e-18
AT4G14620.1 | chr4:8389246-8390448 REVERSE LENGTH=342 72 3e-13
AT1G12030.1 | chr1:4064751-4066319 REVERSE LENGTH=296 72 4e-13
AT3G25240.1 | chr3:9192540-9193385 FORWARD LENGTH=282 70 9e-13
AT2G38820.2 | chr2:16222271-16223393 FORWARD LENGTH=311 68 6e-12
AT2G39650.1 | chr2:16528094-16529274 REVERSE LENGTH=292 63 1e-10
>AT3G07350.1 | chr3:2347674-2348570 FORWARD LENGTH=299
Length = 298
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 133 GYDAGVCKSRWEASGGITAGTYEYVDVV-APAARGQKSRYIVDADFRAGLXXXXXXXXXX 191
G++A +CK++W++SGG+TAG +E++DVV P+A Q R+IVD DF +
Sbjct: 147 GHNAAICKTKWKSSGGLTAGNHEFIDVVYTPSASSQSVRFIVDLDFSSRF-QIARPTSQY 205
Query: 192 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRSHGLHVPPWRKTRYMLAKWLGPYKRX 251
SLR+ GL +PPWRK RYM +WLGPYKR
Sbjct: 206 ARVLQSLPAVFVGKGDDLKRILRLVCDAARISLRNRGLTLPPWRKNRYMQTRWLGPYKRT 265
Query: 252 XXXXXXXXXXXXXXXXXXXXDVKCRAVGF 280
V CRA+GF
Sbjct: 266 TNLTPSTSGVDT---------VMCRAIGF 285
>AT4G14620.1 | chr4:8389246-8390448 REVERSE LENGTH=342
Length = 341
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 133 GYDAGVCKSRWEASGGITAGTYEYVDVVAPAARGQKSRYIVDADFRAGLXXXXXXXXXXX 192
GYD+ +CKS+W+ + I AG YEY+DV+ R I+D DFR+
Sbjct: 155 GYDSSICKSKWDKTRSIPAGEYEYIDVIVNG-----ERLIIDIDFRSEF-EIARQTSGYK 208
Query: 193 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRSHGLHVPPWRKTRYMLAKWLGPYKR 250
SL+ G+H PPWRK YM AKWL Y R
Sbjct: 209 ELLQSLPLIFVGKSDRIRQIVSIVSEASKQSLKKKGMHFPPWRKADYMRAKWLSSYTR 266
>AT1G12030.1 | chr1:4064751-4066319 REVERSE LENGTH=296
Length = 295
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 133 GYDAGVCKSRWEASGGITAGTYEYVDVVAPAARGQKSRYIVDADFRAGLXXXXXXXXXXX 192
G+DAG+CKSRWE G TAG YEYVDV A G K+RYIV+ + AG
Sbjct: 122 GFDAGLCKSRWEKFGKNTAGKYEYVDVKA----GDKNRYIVETNL-AGEFEIARPTTRYL 176
Query: 193 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRSHGLHVPPWRKTRYMLAKWLGPYKR 250
S++ + VPPWR+ YM AKW G YKR
Sbjct: 177 SVLAQVPRVFVGTPEELKQLVRIMCFEIRRSMKRADIFVPPWRRNGYMQAKWFGHYKR 234
>AT3G25240.1 | chr3:9192540-9193385 FORWARD LENGTH=282
Length = 281
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 133 GYDAGVCKSRWEASGGITAGTYEYVDVV-APAARGQKS-RYIVDADFRAGLXXXXXXXXX 190
G+DA VC S+W +S + AG+Y ++DVV P+ QK+ RY+VD DF A
Sbjct: 127 GHDAAVCVSKWTSSSKLIAGSYHFIDVVHKPSDNDQKAVRYLVDLDF-ASEFEIARPTRE 185
Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRSHGLHVPPWRKTRYMLAKWLGPYKR 250
S++S GL +PPWR++ Y+ KW GPYKR
Sbjct: 186 YTRGLQLLPNVFVGNEENLRTIVRESCDAAKRSMKSRGLSLPPWRRSSYLQHKWFGPYKR 245
Query: 251 XXXXXXXXXXXXXXXXXXXXXDVKCRAVGF 280
V CR++GF
Sbjct: 246 KVGSSLGVKPLNSDA-------VSCRSLGF 268
>AT2G38820.2 | chr2:16222271-16223393 FORWARD LENGTH=311
Length = 310
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 133 GYDAGVCKSRWEASGGITAGTYEYVDVVAPAARGQKSRYIVDADFRAGLXXXXXXXXXXX 192
GYDA +CKSRWE S AG YEYVDV+ +G+ R ++D DF++
Sbjct: 171 GYDAALCKSRWEKSPSCPAGEYEYVDVI---MKGE--RLLIDIDFKSKF-EIARATKTYK 224
Query: 193 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRSHGLHVPPWRKTRYMLAKWLGPYKR 250
SL+ GLHVPPWR+ Y+ +KWL + R
Sbjct: 225 SMLQTLPYIFVGKADRLQKIIVLICKAAKQSLKKKGLHVPPWRRAEYVKSKWLSSHVR 282
>AT2G39650.1 | chr2:16528094-16529274 REVERSE LENGTH=292
Length = 291
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 133 GYDAGVCKSRWEASGGITAGTYEYVDVV-APAARGQKSRYIVDADFRAGLXXXXXXXXXX 191
GYDA VC +RW+ G + G EY+D++ + GQ R IVD DFR+
Sbjct: 122 GYDAAVCSARWQGGGKVPGGDNEYIDIILSDTEVGQDDRLIVDIDFRSHF-EIARAVDSY 180
Query: 192 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRSHGLHVPPWRKTRYMLAKWLGPYKR 250
SL+ + + +PPWR Y+ +KW P+KR
Sbjct: 181 QRIMESLPVVYVGTVARLNQFLQVMVDAAKFSLKQNSMPLPPWRSLNYLRSKWHSPHKR 239
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,929,171
Number of extensions: 54010
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 7
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)