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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0914300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0328) R2 : 0.242
β1 : -0.616 (0.12) R2dD : 0.0509 R2D : 0.00807
β2 : -- (--) R2dC : -- R2C : --
β3 : -9.41 (1.7) R2dE : 1.08 R2E : -1.84
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -45.1 (5.95) R2dD*E : 2.01 R2D*E : -0.831
γ1 : -0.0824 (0.0663) R2dN8 : 0.00347 R2N8 : -0.013
σ : 0.579
deviance : 154.8
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 9
memory length : 11
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13
open length of G : 2.99

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.64 0.577 2.85 -0.623 0.0784 -9.4 -0.568 -45.5 -0.0861 4.24 9 10 13 3
210.33 0.675 2.94 -0.481 0.00632 -2.45 1.43 -- -0.232 19.4 9.606 62 15.7 0.208
154.52 0.579 2.85 -0.618 0.073 -9.38 -- -45.1 -0.0841 4.36 9.003 11 13 3
198.39 0.656 2.94 -0.455 0.00456 -0.306 -- -- -0.125 8.36 9.611 39 14.9 0.816
154.8 0.579 2.85 -0.616 -- -9.41 -- -45.1 -0.0824 -- 9 11 13 2.99
198.47 0.66 2.94 -0.453 0.013 -- 0.0523 -- -0.123 12.2 -- -- -- --
198.48 0.66 2.94 -0.451 0.0131 -- -- -- -0.123 13 -- -- -- --
183.51 0.631 2.93 -0.384 -- 2.68 -- -- -0.0971 -- 8.262 10 15 1.69
179.04 0.623 2.93 -- 0.0122 4.22 -- -- -0.0606 21.8 9.076 29 14.9 1.23
198.49 0.658 2.94 -0.452 -- -- -- -- -0.123 -- -- -- -- --
203.85 0.668 2.93 -- 0.0211 -- -- -- -0.0729 13.9 -- -- -- --
178.97 0.623 2.92 -- -- 4.29 -- -- -0.0541 -- 9.05 28 14.9 1.26
203.87 0.666 2.93 -- -- -- -- -- -0.0733 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.64 wind 9 10 > th dose independent rect. 13 3
5 156.03 wind 9 10 > th dose dependent rect. 13 5
7 156.39 wind 9 10 > th dose dependent rect. 13 3
29 163.52 wind 9 30 > th dose dependent rect. 13 13
61 163.97 wind 9 10 > th dose dependent rect. 15 3
65 164.52 wind 9 10 > th dose independent rect. 15 1
73 164.52 wind 9 10 > th dose dependent rect. 15 1
132 168.35 wind 9 30 > th dose independent rect. 13 13
158 168.72 wind 9 30 > th dose dependent rect. 15 11
253 173.59 wind 9 30 > th dose dependent sin 14 NA
255 173.75 wind 9 30 > th dose independent rect. 15 11
303 176.61 humidity 70 270 < th dose independent rect. 12 1
322 179.00 humidity 50 43200 < th dose independent rect. 18 16
326 179.38 humidity 50 43200 < th dose independent rect. 6 4
327 179.39 humidity 50 43200 < th dose independent rect. 20 14
334 179.74 humidity 60 43200 < th dose dependent rect. 18 15
335 179.89 humidity 60 43200 < th dose dependent rect. 19 2
340 180.00 humidity 50 43200 > th dose independent rect. 18 16
343 180.05 humidity 60 43200 < th dose dependent rect. 18 5
346 180.07 humidity 60 43200 < th dose dependent rect. 18 9
357 180.18 humidity 70 43200 < th dose independent rect. 21 2
363 180.35 humidity 60 43200 < th dose independent rect. 19 3
365 180.37 humidity 70 43200 < th dose independent rect. 20 6
371 180.47 humidity 50 43200 > th dose independent rect. 18 5
372 180.47 humidity 50 43200 < th dose independent rect. 17 18
377 180.50 humidity 50 43200 > th dose independent rect. 20 14
379 180.51 humidity 50 43200 > th dose independent rect. 18 8
386 180.54 radiation 30 270 > th dose independent rect. 12 1
388 180.54 radiation 30 4320 < th dose independent rect. 16 14
399 180.67 humidity 50 43200 < th dose dependent rect. 17 18
402 180.70 humidity 70 43200 > th dose independent rect. 21 5
404 180.72 humidity 50 43200 < th dose dependent rect. 16 20
407 180.74 radiation 30 4320 < th dose independent rect. 16 10
412 180.79 radiation 30 4320 < th dose independent rect. 16 1
413 180.79 radiation 30 4320 < th dose independent rect. 16 7
422 180.87 humidity 50 43200 < th dose dependent rect. 7 4
447 181.05 humidity 50 43200 < th dose independent sin 10 NA
462 181.13 humidity 50 43200 > th dose independent rect. 7 2
464 181.13 humidity 50 43200 < th dose dependent rect. 20 15
471 181.17 humidity 60 43200 < th dose dependent rect. 7 1
507 181.45 humidity 70 43200 < th dose dependent rect. 21 1
510 181.49 humidity 50 43200 > th dose independent rect. 6 4
521 181.56 humidity 50 43200 < th dose independent rect. 16 20
523 181.61 humidity 50 43200 > th dose independent sin 10 NA
530 181.65 radiation 40 4320 < th dose dependent rect. 18 6
559 181.84 humidity 50 43200 > th dose independent rect. 24 10
571 181.94 humidity 50 43200 < th dose dependent sin 11 NA
591 182.11 humidity 70 43200 < th dose independent rect. 24 1
596 182.16 humidity 50 43200 > th dose independent rect. 16 20
619 182.33 radiation 40 4320 < th dose dependent rect. 18 9
622 182.35 radiation 30 4320 < th dose independent rect. 11 1
628 182.39 radiation 40 4320 > th dose dependent rect. 15 1
654 182.48 humidity 70 43200 < th dose dependent rect. 24 1
655 182.48 temperature 15 14400 < th dose dependent rect. 20 4
656 182.49 humidity 70 43200 > th dose independent rect. 24 1
708 182.63 temperature 15 14400 < th dose dependent rect. 19 6
709 182.64 temperature 15 14400 < th dose dependent sin 15 NA
711 182.64 temperature 15 14400 < th dose dependent rect. 17 9
714 182.64 temperature 15 14400 < th dose dependent rect. 12 16
717 182.65 wind 9 30 > th dose independent sin 14 NA
731 182.67 radiation 40 4320 > th dose independent rect. 15 1
830 182.78 temperature 15 14400 < th dose dependent no NA NA
840 182.78 temperature 15 14400 < th dose dependent rect. 19 22
845 182.78 temperature 15 14400 < th dose dependent rect. 17 23
879 182.80 temperature 15 14400 < th dose dependent rect. 1 23
880 182.80 temperature 15 14400 < th dose dependent rect. 3 23
893 182.82 temperature 15 43200 < th dose dependent rect. 4 1
948 182.90 temperature 15 14400 > th dose independent rect. 11 2
949 182.90 temperature 15 14400 < th dose independent rect. 11 2
951 182.90 temperature 15 14400 < th dose dependent rect. 1 17
976 182.93 temperature 15 14400 < th dose independent rect. 9 5