Os01g0911100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DEAD box RNA helicase.
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Os01g0911100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DEAD box RNA helicase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.16 | 0.294 | 12 | -0.132 | 0.405 | 0.453 | 0.8 | 0.331 | 0.464 | 23.3 | 77.19 | 16 | -- | -- |
| 39.42 | 0.292 | 12 | -0.119 | 0.419 | 0.447 | 0.975 | -- | 0.468 | 23.5 | 78.03 | 15 | -- | -- |
| 40.92 | 0.3 | 12 | -0.178 | 0.38 | 0.441 | -- | 0.865 | 0.448 | 23.5 | 74.56 | 16 | -- | -- |
| 43.46 | 0.307 | 12 | -0.158 | 0.4 | 0.48 | -- | -- | 0.472 | 23.4 | 78.45 | 15 | -- | -- |
| 46.89 | 0.321 | 12 | -0.174 | -- | 0.655 | -- | 0.885 | 0.47 | -- | 72.61 | 10 | -- | -- |
| 44.97 | 0.314 | 12 | -0.0859 | 0.693 | -- | 1.09 | -- | 0.407 | 0.792 | -- | -- | -- | -- |
| 49.96 | 0.331 | 12 | -0.127 | 0.693 | -- | -- | -- | 0.401 | 0.994 | -- | -- | -- | -- |
| 49.97 | 0.331 | 12 | -0.136 | -- | 0.685 | -- | -- | 0.481 | -- | 72.61 | 10 | -- | -- |
| 44.11 | 0.309 | 12 | -- | 0.4 | 0.476 | -- | -- | 0.487 | 23.4 | 78.17 | 15 | -- | -- |
| 79.85 | 0.418 | 12 | -0.101 | -- | -- | -- | -- | 0.414 | -- | -- | -- | -- | -- |
| 50.39 | 0.332 | 12 | -- | 0.691 | -- | -- | -- | 0.415 | 0.986 | -- | -- | -- | -- |
| 50.46 | 0.332 | 12 | -- | -- | 0.682 | -- | -- | 0.496 | -- | 72.61 | 10 | -- | -- |
| 80.12 | 0.418 | 12 | -- | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.14 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 10 | 38.29 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 13 | 38.33 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 42 | 38.59 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 12 |
| 45 | 38.60 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 15 |
| 51 | 38.63 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 54 | 38.66 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 60 | 38.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 71 | 38.75 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 75 | 38.76 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 113 | 38.89 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 19 |
| 130 | 38.93 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 178 | 39.04 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 183 | 39.05 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 192 | 39.06 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 212 | 39.08 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 213 | 39.09 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 226 | 39.11 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 235 | 39.12 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 251 | 39.15 | precipitation | 0.1 | 270 | > th | dose independent | sin | 13 | NA |
| 252 | 39.15 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 255 | 39.15 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 262 | 39.15 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 11 |
| 264 | 39.15 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 16 | 22 |
| 266 | 39.16 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 280 | 39.17 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 344 | 39.22 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 345 | 39.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 349 | 39.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 357 | 39.23 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 388 | 39.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 394 | 39.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 405 | 39.26 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 412 | 39.27 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 421 | 39.27 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 439 | 39.29 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 468 | 39.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 474 | 39.31 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 477 | 39.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 486 | 39.33 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 494 | 39.33 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 11 | NA |
| 501 | 39.33 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 508 | 39.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 510 | 39.34 | humidity | 80.0 | 10 | > th | dose dependent | no | NA | NA |
| 527 | 39.35 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 546 | 39.37 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 547 | 39.37 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 548 | 39.38 | precipitation | 0.1 | 270 | < th | dose independent | sin | 13 | NA |
| 552 | 39.38 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 13 | NA |
| 553 | 39.38 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 564 | 39.38 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 592 | 39.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 600 | 39.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 641 | 39.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 650 | 39.45 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 732 | 39.50 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 14 |
| 735 | 39.50 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 23 |
| 742 | 39.50 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 774 | 39.52 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 19 |
| 779 | 39.53 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 812 | 39.54 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 830 | 39.56 | wind | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 841 | 39.56 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 845 | 39.56 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 860 | 39.57 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 868 | 39.58 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 931 | 39.61 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 934 | 39.61 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 953 | 39.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 954 | 39.62 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 17 | 17 |
| 964 | 39.63 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 990 | 39.64 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 20 |