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Os01g0906600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.00944) R2 : 0.22
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.225 (0.0199) R2dN8 : 0.284 R2N8 : 0.22
σ : 0.178
deviance : 14.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
9.41 0.144 11.3 0.296 0.13 0.25 0.0402 0.0777 0.282 4.22 70.39 1520 -- --
9.2 0.141 11.3 0.279 0.118 0.342 0.0992 -- 0.3 4.2 74 3050 -- --
9.38 0.143 11.3 0.291 0.114 0.26 -- 0.0858 0.278 4.24 70.51 1591 -- --
9.19 0.141 11.3 0.28 0.133 0.33 -- -- 0.299 4.18 73.38 2997 -- --
9.85 0.146 11.3 0.329 -- 0.286 -- -0.0102 0.288 -- 70 1729 -- --
11.6 0.16 11.3 0.255 0.143 -- -0.0246 -- 0.25 4.01 -- -- -- --
11.6 0.16 11.3 0.255 0.142 -- -- -- 0.251 4.01 -- -- -- --
9.8 0.146 11.3 0.32 -- 0.316 -- -- 0.301 -- 70 1723 -- --
11.22 0.156 11.3 -- 0.127 0.311 -- -- 0.268 4.14 73.02 3059 -- --
12.71 0.167 11.3 0.261 -- -- -- -- 0.254 -- -- -- -- --
13.32 0.171 11.3 -- 0.147 -- -- -- 0.222 3.98 -- -- -- --
11.98 0.161 11.3 -- -- 0.344 -- -- 0.279 -- 73.26 3178 -- --
14.51 0.178 11.3 -- -- -- -- -- 0.225 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 9.01 precipitation 0.1 43200 > th dose dependent rect. 19 2
2 9.10 precipitation 0.1 43200 > th dose dependent rect. 17 4
4 9.14 humidity 70.0 1440 < th dose independent rect. 16 1
8 9.21 precipitation 0.1 43200 > th dose independent rect. 19 2
9 9.21 precipitation 0.1 43200 < th dose independent rect. 19 2
10 9.21 precipitation 0.1 43200 < th dose dependent rect. 19 2
13 9.28 humidity 70.0 1440 > th dose independent rect. 16 2
15 9.31 precipitation 0.1 43200 < th dose independent rect. 16 2
17 9.31 precipitation 0.1 43200 < th dose dependent rect. 16 2
18 9.32 precipitation 0.1 43200 > th dose independent rect. 16 2
20 9.33 humidity 70.0 1440 > th dose independent rect. 16 21
23 9.34 humidity 70.0 14400 < th dose dependent rect. 16 3
24 9.35 humidity 70.0 1440 > th dose independent rect. 15 18
27 9.36 humidity 70.0 14400 < th dose dependent rect. 17 1
30 9.36 wind 1.0 43200 < th dose dependent rect. 1 12
31 9.37 humidity 70.0 1440 > th dose independent sin 17 NA
65 9.39 wind 1.0 43200 < th dose independent rect. 24 4
74 9.40 precipitation 0.1 14400 > th dose independent rect. 13 11
75 9.40 precipitation 0.1 14400 < th dose independent rect. 13 11
88 9.40 humidity 70.0 1440 > th dose independent rect. 11 22
91 9.40 precipitation 0.1 14400 < th dose dependent rect. 13 11
99 9.41 humidity 60.0 14400 > th dose independent rect. 12 7
136 9.41 wind 1.0 43200 < th dose dependent rect. 24 4
145 9.42 humidity 60.0 14400 > th dose independent sin 14 NA
147 9.42 humidity 60.0 14400 > th dose independent rect. 13 1
148 9.42 humidity 60.0 14400 > th dose independent rect. 17 1
150 9.42 precipitation 0.1 14400 > th dose independent rect. 16 8
151 9.42 humidity 70.0 1440 > th dose independent rect. 11 9
214 9.43 precipitation 0.1 14400 > th dose independent sin 18 NA
216 9.43 precipitation 0.1 14400 < th dose independent sin 18 NA
218 9.43 humidity 60.0 14400 > th dose independent rect. 12 3
219 9.43 humidity 60.0 14400 < th dose independent rect. 16 3
223 9.43 humidity 50.0 14400 > th dose independent rect. 15 7
225 9.43 precipitation 0.1 14400 < th dose independent rect. 16 8
231 9.43 humidity 70.0 1440 > th dose independent rect. 8 12
256 9.43 precipitation 0.1 14400 < th dose dependent sin 18 NA
261 9.43 precipitation 0.1 14400 < th dose dependent rect. 16 8
270 9.44 humidity 70.0 1440 > th dose independent no NA NA
271 9.44 humidity 60.0 14400 < th dose independent sin 14 NA
276 9.44 humidity 60.0 14400 < th dose independent rect. 17 1
278 9.44 humidity 50.0 14400 > th dose independent rect. 15 3
328 9.44 humidity 70.0 1440 > th dose independent rect. 5 16
335 9.44 humidity 70.0 1440 > th dose independent rect. 3 17
356 9.44 humidity 70.0 1440 > th dose independent rect. 1 19
405 9.44 humidity 70.0 1440 > th dose independent rect. 21 23
406 9.44 humidity 70.0 1440 > th dose independent rect. 23 23
410 9.44 precipitation 0.1 43200 > th dose dependent rect. 13 5
423 9.44 precipitation 0.1 14400 > th dose dependent rect. 13 11
452 9.44 precipitation 0.1 14400 > th dose dependent rect. 5 19
463 9.45 humidity 60.0 14400 < th dose independent rect. 12 7
467 9.45 wind 1.0 43200 < th dose independent rect. 1 12
539 9.46 wind 1.0 43200 > th dose independent rect. 24 4
590 9.46 precipitation 0.1 14400 > th dose dependent sin 16 NA
597 9.46 wind 1.0 43200 < th dose dependent rect. 24 7
681 9.47 wind 7.0 43200 < th dose dependent rect. 6 2
721 9.48 humidity 60.0 14400 < th dose independent rect. 13 1
771 9.48 humidity 70.0 14400 < th dose dependent sin 13 NA
812 9.49 wind 1.0 43200 > th dose independent rect. 1 12
839 9.49 precipitation 0.1 14400 > th dose dependent no NA NA
873 9.49 precipitation 0.1 14400 > th dose dependent rect. 17 21
894 9.49 precipitation 0.1 14400 > th dose dependent rect. 19 23
896 9.50 precipitation 0.1 14400 > th dose independent rect. 17 4
897 9.50 precipitation 0.1 14400 < th dose independent rect. 17 4
924 9.50 humidity 70.0 1440 < th dose independent rect. 15 18
932 9.50 wind 1.0 43200 > th dose dependent rect. 6 2
934 9.50 precipitation 0.1 14400 < th dose dependent rect. 17 4
945 9.50 precipitation 0.1 14400 > th dose dependent rect. 16 11
958 9.51 wind 1.0 43200 > th dose independent rect. 1 1
972 9.51 humidity 70.0 1440 < th dose independent rect. 16 21
983 9.51 humidity 80.0 1440 < th dose dependent rect. 12 1
984 9.51 humidity 60.0 1440 > th dose dependent rect. 11 2
992 9.51 precipitation 0.1 14400 > th dose dependent rect. 16 8