BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0906600 Os01g0906600|AK100885
(599 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63200.1 | chr5:25349043-25352899 FORWARD LENGTH=650 642 0.0
AT3G04240.1 | chr3:1114187-1120722 REVERSE LENGTH=978 64 3e-10
AT3G11540.1 | chr3:3632842-3637547 FORWARD LENGTH=915 60 4e-09
>AT5G63200.1 | chr5:25349043-25352899 FORWARD LENGTH=650
Length = 649
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/625 (54%), Positives = 436/625 (69%), Gaps = 44/625 (7%)
Query: 1 MLADLNVDPPESDGEDQXXXXXXXXXXXXXXXXXXXXXXIDSSTRSSNDEGSLAKSVITT 60
+LADLN +PPE+D D TR SN+E ++T
Sbjct: 27 VLADLNFNPPETDDLDSSIPIPTPP----------------PITRLSNEESHQEGGILTC 70
Query: 61 KEPDTVECE--------------------------DADQHCQGASVAREEKVSNLKAALV 94
KE + E E D D QG +REEK+SNLK L+
Sbjct: 71 KEVEPGEVEAKKISKVGKCRSRSKIESSSDCGVDADGDLANQGVPASREEKISNLKMGLI 130
Query: 95 HVARKMPKNAHAHFMLGLMYQRLGQPQKAIAAYEKSSEILLQDEEEVRRPDLLSSVRIHH 154
HVARKMPKNAHAHF+LGLM+QRLGQ QKAI YEK+ EILL E E+ RP+LL V+IHH
Sbjct: 131 HVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEILLGCEPEIARPELLLLVQIHH 190
Query: 155 AQCILQTSMGDTFD-EELESGELDEILVKMKSSVESDPRQAAVWNILGLVLLRSGQLQSA 213
QC+L GDT +ELE EL+EIL K+K S++ D RQAAVWN LGL+LL++G L SA
Sbjct: 191 GQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGCLMSA 250
Query: 214 ISVLSSLTVVAPDYLDSLANLGVAYIQSGNLELATKCFQELVIKDQNHPAALVNYAALLL 273
ISVLSSL + PD D LANLGVAY+QSG++EL+ KCFQ+LV+KD NHPAAL+NYAA LL
Sbjct: 251 ISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQDLVLKDHNHPAALINYAAELL 310
Query: 274 CKYXXXXXXXXXXXXXXXCLHQKEGLAVAKECLLAAVKADPKAASVWVNLANAYYMAGEH 333
CK+ QK + VAKECLLAA+++DPK+A WVNLAN+YYM G+H
Sbjct: 311 CKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRSDPKSAHAWVNLANSYYMMGDH 370
Query: 334 RNSKRCLEQAAKHEPSHMPARYAIAVHRIRDAVRSQCSDDQLLWASNEMATVLKEGDPSA 393
R+S +CLE+AAK +P+ M R+A+AV RI+DA RSQ + DQL WA NEMA+V++EG+
Sbjct: 371 RSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDASDQLSWAGNEMASVIREGESVP 430
Query: 394 VDAPIAWAGLAMAHRAQHEIAAAYDTEQINLSDVEERALYTLKQAIQEDPDDAVQWHQLG 453
+D PIAWAGLAMAH+AQHEIAAA+ ++ L+++EERA+Y+LKQA+ EDP+DAV+WHQLG
Sbjct: 431 IDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERAVYSLKQAVTEDPEDAVRWHQLG 490
Query: 454 LYNICTTQFSRSVNFLKAAVARSPDCSYVWSNLGIALQLSDD-SSCETVYKRALILSSSQ 512
L+++C+ Q+ S +LKAAV RS +CSY WSNLGI+LQLSD+ S E VYKRAL +S
Sbjct: 491 LHSLCSQQYKLSQKYLKAAVGRSRECSYAWSNLGISLQLSDEHSEAEEVYKRALTVSKED 550
Query: 513 QSYAILSNLGILYRQHGRYELARRMLLRSLELCPGHAPANNNLGLVSIAEGRYEEAISCF 572
Q++AILSNLG LYRQ +YE+++ M ++LEL PG+APA NNLGLV +AE R+EEA SCF
Sbjct: 551 QAHAILSNLGNLYRQKKQYEVSKAMFSKALELKPGYAPAYNNLGLVFVAERRWEEAKSCF 610
Query: 573 EKSLQSDPLLDAAKSNLAKVLALSK 597
EKSL++D LLDAA+SNL K +S+
Sbjct: 611 EKSLEADSLLDAAQSNLLKATTMSR 635
>AT3G04240.1 | chr3:1114187-1120722 REVERSE LENGTH=978
Length = 977
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 32/294 (10%)
Query: 307 LAAVKADPKAASVWVNLANAYYMAGEHRNSKRCLEQAAKHEPSHMPARYAIA-------- 358
L A++ P A W NLA+AY G + +C +QA P + A +
Sbjct: 145 LIAIELRPNFADAWSNLASAYMRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGL 204
Query: 359 VHRIR----DAVRSQCSDDQLLWASNEMATVLKEGDPSAVDAPIAWAGLAMAHRAQHEIA 414
+H +AVR Q + + W SN ++ GD ++ + + ++ ++
Sbjct: 205 IHEAYSCYLEAVRIQPTF-AIAW-SNLAGLFMESGD---LNRALQY------YKEAVKLK 253
Query: 415 AAYDTEQINLSDVEE------RALYTLKQAIQEDPDDAVQWHQLGLYNICTTQFSRSVNF 468
A+ +NL +V + A+ + A+Q P+ A+ + + Q ++
Sbjct: 254 PAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNIASIYYEQGQLDLAIRH 313
Query: 469 LKAAVARSPDCSYVWSNLGIALQ-LSDDSSCETVYKRALILSSSQQSYAILSNLGILYRQ 527
K A++R P ++NLG AL+ + Y + L L + ++NLG +Y +
Sbjct: 314 YKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQPNHPQ--AMANLGNIYME 371
Query: 528 HGRYELARRMLLRSLELCPGHAPANNNLGLVSIAEGRYEEAISCFEKSLQSDPL 581
A + +L + G + NNL ++ +G Y +AISC+ + L+ DPL
Sbjct: 372 WNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYNEVLRIDPL 425
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 115/525 (21%), Positives = 187/525 (35%), Gaps = 100/525 (19%)
Query: 85 KVSNLKAALVH---VARKMPKNAHAHFMLGLMYQRLGQPQKAIAAYEKSSEILLQDEEEV 141
K + K AL H V ++ P ++G +Y +L + IA ++EE +
Sbjct: 65 KGGDFKQALEHSNMVYQRNPLRTDNLLLIGAIYYQLQEYDMCIA----------RNEEAL 114
Query: 142 RRPDLLSSVRIHHAQCILQTSMGDTFDEELESGELDEILVKMKSSVESDPRQAAVWNILG 201
R ++ A+C G+ + E G+ D + ++E P A W+ L
Sbjct: 115 R-------IQPQFAEC-----YGNMANAWKEKGDTDRAIRYYLIAIELRPNFADAWSNLA 162
Query: 202 LVLLRSGQLQSAISVLSSLTVVAPDYLDSLANLGVAYIQSGNLELATKCFQELVIKDQNH 261
+R G+L A + P +D+ +NLG G + A C+ E V
Sbjct: 163 SAYMRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTF 222
Query: 262 PAALVNYAALLLCKYXXXXXXXXXXXXXXXCLHQKEGLAVAKECLLAAVKADPKAASVWV 321
A N A L + + L A + AVK P ++
Sbjct: 223 AIAWSNLAGLFM---------------------ESGDLNRALQYYKEAVKLKPAFPDAYL 261
Query: 322 NLANAYYMAGEHRNSKRCLEQAAKHEPSHMPARYAIAVHR---------IRDAVRSQCSD 372
NL N Y G + C + A + P+ A IA IR ++ D
Sbjct: 262 NLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRD 321
Query: 373 DQLLWASNEMATVLKEGDPSAVDAPIAWAGLAMAHRAQHEIAAAYDTEQINLSDVEERAL 432
+ L A N + LK D VD + +A + H A A NL ++
Sbjct: 322 PRFLEAYNNLGNALK--DIGRVDEAVRCYNQCLALQPNHPQAMA------NLGNI----- 368
Query: 433 YTLKQAIQEDPDDAVQWHQLGLYNICTTQFSRSVNFLKAAVARSPDCSYVWSNLGIALQ- 491
++W+ +G + + KA +A + S ++NL I +
Sbjct: 369 -------------YMEWNMMG----------PASSLFKATLAVTTGLSAPFNNLAIIYKQ 405
Query: 492 ---LSDDSSCETVYKRALILSSSQQSYAILSNLGILYRQHGRYELARRMLLRSLELCPGH 548
SD SC R L++ L N G Y++ GR A + + ++ P
Sbjct: 406 QGNYSDAISCYNEVLRIDPLAADA-----LVNRGNTYKEIGRVTEAIQDYMHAINFRPTM 460
Query: 549 APANNNLGLVSIAEGRYEEAISCFEKSLQSDPLLDAAKSNLAKVL 593
A A+ NL G E AI+ ++++L P A NL L
Sbjct: 461 AEAHANLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTL 505
>AT3G11540.1 | chr3:3632842-3637547 FORWARD LENGTH=915
Length = 914
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 47/300 (15%)
Query: 309 AVKADPKAASVWVNLANAYYMAGEHRNSKRCLEQAAKHEPSHMPARYAIAV-HRIRDAV- 366
A+K DP A + NL Y ++ N+ C E+AA P + A + V ++ R +
Sbjct: 178 ALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLE 237
Query: 367 -------RSQCSDDQLLWASNEMATVLKEGDPSAVDAPIAWAGLAMAHRAQHEIAAAYDT 419
R A N MA L + + + + E
Sbjct: 238 MAITCYERCLAVSPNFEIAKNNMAIALTD----------------LGTKVKLE------- 274
Query: 420 EQINLSDVEERALYTLKQAIQEDPDDAVQWHQLGLYNICTTQFSRSVNFLKAAVARSPDC 479
DV + Y K+A+ + A + LG+ +F ++ F + A +P C
Sbjct: 275 -----GDVTQGVAY-YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 328
Query: 480 SYVWSNLGIALQLSD--DSSCETVYKRAL-ILSSSQQSYAILSNLGILYRQHGRYELARR 536
+ +NLG+ + D D + E Y+ AL I + QS L+NLG++Y G+ + A
Sbjct: 329 AEACNNLGVLYKDRDNLDKAVE-CYQMALSIKPNFAQS---LNNLGVVYTVQGKMDAAAS 384
Query: 537 MLLRSLELCPGHAPANNNLGLVSIAEGRYEEAISCFEKSLQSDPLLDAAKSNLAKVLALS 596
M+ +++ P +A A NNLG++ G AI +E+ L+ DP D+ + ++LA++
Sbjct: 385 MIEKAILANPTYAEAFNNLGVLYRDAGNITMAIDAYEECLKIDP--DSRNAGQNRLLAMN 442
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.128 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,376,406
Number of extensions: 422637
Number of successful extensions: 1679
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1649
Number of HSP's successfully gapped: 7
Length of query: 599
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 495
Effective length of database: 8,255,305
Effective search space: 4086375975
Effective search space used: 4086375975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)