Os01g0901600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AMP-dependent synthetase and ligase domain containing protein.
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Os01g0901600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AMP-dependent synthetase and ligase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 501.86 | 1.05 | 9.64 | -4.96 | 0.437 | 3.84 | 3.32 | -8.81 | -0.334 | 6.11 | 1.195 | 4478 | 19.4 | -- |
| 568.51 | 1.11 | 9.41 | -3.44 | 0.337 | 4.27 | 3.03 | -- | -0.0982 | 5.62 | 7.513 | 5930 | 19.5 | -- |
| 505.25 | 1.05 | 9.63 | -4.92 | 2.07 | 4.82 | -- | -11.4 | -0.366 | 6.63 | -7.177 | 4947 | 17.8 | -- |
| 573.24 | 1.12 | 9.37 | -3.27 | 1.07 | 4.55 | -- | -- | 0.0683 | 12.2 | 2.074 | 5499 | 13.2 | -- |
| 538.98 | 1.08 | 9.67 | -5.01 | -- | 3.84 | -- | -9.66 | -0.305 | -- | -17.24 | 4426 | 18.9 | -- |
| 831.37 | 1.35 | 9.19 | -1.43 | 0.441 | -- | 3.25 | -- | 0.816 | 5.88 | -- | -- | -- | -- |
| 845.3 | 1.36 | 9.18 | -1.39 | 0.635 | -- | -- | -- | 0.809 | 8.77 | -- | -- | -- | -- |
| 592.51 | 1.13 | 9.42 | -3.43 | -- | 4.71 | -- | -- | -0.0527 | -- | -45.46 | 5821 | 19.2 | -- |
| 776.39 | 1.3 | 9.2 | -- | 1.51 | 3.09 | -- | -- | 0.65 | 10 | 6.381 | 3504 | 12.5 | -- |
| 868.18 | 1.38 | 9.2 | -1.39 | -- | -- | -- | -- | 0.814 | -- | -- | -- | -- | -- |
| 896.26 | 1.4 | 9.15 | -- | 0.632 | -- | -- | -- | 0.964 | 8.94 | -- | -- | -- | -- |
| 792.84 | 1.31 | 9.23 | -- | -- | 2.7 | -- | -- | 0.691 | -- | -89.58 | 4391 | 20.9 | -- |
| 919.13 | 1.42 | 9.17 | -- | -- | -- | -- | -- | 0.968 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 484.26 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 5 | 491.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 12 | 496.04 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 14 | 496.53 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 27 | 499.03 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 29 | 499.18 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 41 | 502.54 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 55 | 504.97 | wind | 7 | 43200 | < th | dose dependent | rect. | 5 | 16 |
| 85 | 506.70 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 87 | 506.85 | wind | 7 | 43200 | < th | dose dependent | sin | 23 | NA |
| 101 | 507.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 19 |
| 120 | 507.95 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 153 | 508.58 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 162 | 508.78 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 164 | 508.80 | wind | 1 | 43200 | > th | dose dependent | sin | 22 | NA |
| 170 | 508.93 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 175 | 508.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 183 | 509.12 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 188 | 509.17 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 222 | 509.60 | wind | 5 | 43200 | < th | dose independent | sin | 17 | NA |
| 259 | 510.07 | wind | 3 | 43200 | > th | dose dependent | sin | 17 | NA |
| 270 | 510.17 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 276 | 510.22 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 280 | 510.28 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 286 | 510.33 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 305 | 510.48 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 375 | 511.15 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 381 | 511.23 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 392 | 511.32 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 424 | 511.57 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 440 | 511.71 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 479 | 511.94 | wind | 5 | 43200 | > th | dose independent | sin | 17 | NA |
| 612 | 512.87 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 624 | 512.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 633 | 512.98 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 800 | 514.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 898 | 514.77 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 916 | 514.93 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 935 | 515.03 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 938 | 515.04 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 973 | 515.26 | humidity | 60 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 999 | 515.42 | wind | 9 | 43200 | < th | dose dependent | no | NA | NA |