BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0901600 Os01g0901600|J065161G03
(82 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63380.1 | chr5:25387581-25390026 REVERSE LENGTH=563 94 2e-20
AT1G20480.1 | chr1:7094978-7097073 REVERSE LENGTH=566 80 3e-16
AT1G20510.1 | chr1:7103645-7105856 REVERSE LENGTH=547 75 7e-15
AT4G19010.1 | chr4:10411715-10414221 REVERSE LENGTH=567 74 2e-14
AT5G38120.1 | chr5:15213773-15216137 FORWARD LENGTH=551 67 3e-12
AT1G20490.1 | chr1:7097958-7099672 REVERSE LENGTH=448 65 8e-12
AT1G20500.1 | chr1:7100502-7102847 REVERSE LENGTH=551 63 3e-11
AT4G05160.1 | chr4:2664451-2666547 FORWARD LENGTH=545 59 7e-10
AT3G23790.1 | chr3:8575268-8581001 FORWARD LENGTH=723 46 3e-06
>AT5G63380.1 | chr5:25387581-25390026 REVERSE LENGTH=563
Length = 562
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 53/66 (80%)
Query: 13 LQSYGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRG 72
+Q YGLTES+GP A+ GPEE YGSVGR++ ++AKIVD +TGE L PG+ GELW+RG
Sbjct: 351 VQGYGLTESSGPAASTFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRG 410
Query: 73 PVVMKG 78
PV+MKG
Sbjct: 411 PVIMKG 416
>AT1G20480.1 | chr1:7094978-7097073 REVERSE LENGTH=566
Length = 565
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 45/66 (68%)
Query: 13 LQSYGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRG 72
LQ YGLTEST A+M EE+ YG+ G LAP V+ KIVD TG VLG + GELWIR
Sbjct: 358 LQGYGLTESTAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRS 417
Query: 73 PVVMKG 78
P VMKG
Sbjct: 418 PTVMKG 423
>AT1G20510.1 | chr1:7103645-7105856 REVERSE LENGTH=547
Length = 546
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 13 LQSYGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRG 72
LQ YGLTESTG A+ EES YG+ G+L+ ++ +IVD TG++LGP + GELW++G
Sbjct: 337 LQGYGLTESTGIGASTDTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKG 396
Query: 73 PVVMKG 78
P +MKG
Sbjct: 397 PSIMKG 402
>AT4G19010.1 | chr4:10411715-10414221 REVERSE LENGTH=567
Length = 566
Score = 73.6 bits (179), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 13 LQSYGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRG 72
+Q YG+TEST E+ + Y SVG LAP +QAK+VD ++G L PG RGELWI+G
Sbjct: 355 IQGYGMTESTAVGTRGFNSEKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQG 414
Query: 73 PVVMKG 78
P VMKG
Sbjct: 415 PGVMKG 420
>AT5G38120.1 | chr5:15213773-15216137 FORWARD LENGTH=551
Length = 550
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 14 QSYGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRGP 73
Q Y LTES G A++ EES YG+VG L+ V+A+IVD TG+V+G + GELW++GP
Sbjct: 347 QGYALTESNGAGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGP 406
Query: 74 VVMKG 78
+ KG
Sbjct: 407 SIAKG 411
>AT1G20490.1 | chr1:7097958-7099672 REVERSE LENGTH=448
Length = 447
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 13 LQSYGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRG 72
Q Y LTES G A+ EES YG+VG L+ ++A+IVD TG V+G + GELW++G
Sbjct: 345 FQGYALTESHGSGASTESVEESLKYGAVGLLSSGIEARIVDPDTGRVMGVNQPGELWLKG 404
Query: 73 PVVMKG 78
P + KG
Sbjct: 405 PSISKG 410
>AT1G20500.1 | chr1:7100502-7102847 REVERSE LENGTH=551
Length = 550
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 40/66 (60%)
Query: 13 LQSYGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRG 72
LQ Y LTES G A EES YG+ G L V+A+IVD TG +G + GELW++G
Sbjct: 343 LQGYALTESNGGGAFTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKG 402
Query: 73 PVVMKG 78
P + KG
Sbjct: 403 PSISKG 408
>AT4G05160.1 | chr4:2664451-2666547 FORWARD LENGTH=545
Length = 544
Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 10 ILRLQSYGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELW 69
+L +Q YG+TE+ G V+ GS G LAP V+A+IV TG+ P ++GE+W
Sbjct: 334 VLLMQGYGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIW 393
Query: 70 IRGPVVMKG 78
+RGP +MKG
Sbjct: 394 VRGPNMMKG 402
>AT3G23790.1 | chr3:8575268-8581001 FORWARD LENGTH=723
Length = 722
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 16 YGLTESTGPVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRGPVV 75
YGLTE T PV + A GSVG + KIVD TG VL PG +G + +RGP V
Sbjct: 480 YGLTE-TSPVVS-ARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPV 537
Query: 76 MKG 78
MKG
Sbjct: 538 MKG 540
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,631,600
Number of extensions: 50032
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 9
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)