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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0899700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pollen Ole e 1 allergen and extensin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.139) R2 : 0.212
β1 : -8.44 (0.51) R2dD : 0.423 R2D : 0.197
β2 : 2.27 (0.379) R2dC : 0.171 R2C : -0.0283
β3 : -3.09 (0.265) R2dE : -0.274 R2E : -0.476
β4 : 1.97 (1.7) R2dD*C : -0.00762 R2D*C : -0.0794
β5 : 6.87 (1.13) R2dD*E : -0.0591 R2D*E : -0.149
γ1 : -3.96 (0.298) R2dN8 : 0.327 R2N8 : 0.0374
σ : 1.67
deviance : 1260.8
__
_____
C
peak time of C : 4.27
E
wheather : radiation
threshold : 3
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1260.8 1.67 5.81 -8.44 2.27 -3.09 1.97 6.87 -3.96 4.27 3 7 -- --
1639.03 1.89 5.61 -7.54 2.47 -3.07 1.23 -- -3.03 3.79 58.45 3 -- --
1602.02 1.86 5.56 -7.35 2.58 -3.3 -- 5.07 -2.92 3.7 59.47 9 -- --
1599.32 1.86 5.57 -7.27 2.49 -4.25 -- -- -2.82 3.7 59.9 43 -- --
1943.29 2.05 5.56 -7.31 -- -1.63 -- 7.2 -2.93 -- 59.43 9 -- --
1703.32 1.93 5.63 -7.71 2.36 -- 2.26 -- -3.11 4.12 -- -- -- --
1717.74 1.94 5.63 -7.74 2.37 -- -- -- -3.12 4.1 -- -- -- --
1950.8 2.06 5.58 -7.27 -- -3.67 -- -- -2.89 -- 60 49 -- --
1678.95 1.91 5.1 -- 2.78 -6.94 -- -- -1.22 3.99 59.5 26941 -- --
2022.46 2.1 5.65 -7.64 -- -- -- -- -3.06 -- -- -- -- --
3295.68 2.69 5.44 -- 2.22 -- -- -- -2.26 4.15 -- -- -- --
1973.15 2.07 5.22 -- -- -7.03 -- -- -1.15 -- 59.52 27022 -- --
3562.78 2.79 5.45 -- -- -- -- -- -2.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1235.42 radiation 30 14400 > th dose dependent rect. 7 1
16 1249.02 radiation 20 1440 < th dose independent rect. 15 23
17 1253.45 radiation 20 1440 < th dose independent rect. 10 22
20 1255.79 radiation 10 1440 < th dose independent rect. 16 1
21 1258.00 radiation 40 1440 < th dose dependent rect. 11 1
22 1258.47 radiation 20 1440 < th dose independent rect. 7 12
23 1258.49 radiation 20 1440 < th dose independent rect. 7 21
36 1259.73 radiation 20 1440 < th dose independent sin 23 NA
39 1260.04 radiation 10 1440 < th dose independent rect. 11 20
56 1260.53 radiation 20 1440 < th dose independent rect. 13 23
66 1260.64 radiation 20 1440 < th dose independent rect. 23 20
67 1260.66 radiation 20 1440 < th dose independent rect. 1 18
91 1260.80 radiation 20 1440 < th dose independent no NA NA
107 1260.82 radiation 20 1440 < th dose independent rect. 18 23
138 1262.56 radiation 30 1440 < th dose independent rect. 10 2
185 1267.65 radiation 40 1440 < th dose dependent rect. 10 3
197 1269.62 radiation 10 1440 < th dose independent sin 15 NA
224 1272.21 radiation 20 1440 < th dose independent rect. 7 7
228 1273.10 radiation 30 1440 < th dose dependent rect. 16 22
269 1278.76 radiation 20 1440 < th dose dependent rect. 9 23
280 1281.01 radiation 1 1440 > th dose dependent rect. 10 3
285 1281.31 radiation 1 1440 > th dose dependent rect. 16 22
311 1283.20 radiation 1 1440 > th dose dependent rect. 10 22
356 1284.74 radiation 30 1440 < th dose dependent sin 0 NA
369 1285.63 radiation 20 1440 < th dose dependent rect. 5 14
371 1285.66 radiation 20 1440 < th dose dependent rect. 23 20
372 1285.66 radiation 20 1440 < th dose dependent rect. 5 23
389 1285.80 radiation 20 1440 < th dose dependent rect. 5 20
408 1285.90 radiation 20 1440 < th dose dependent no NA NA
410 1285.90 radiation 20 1440 < th dose dependent rect. 2 23
582 1288.00 radiation 1 1440 > th dose dependent rect. 11 1
631 1289.54 radiation 1 1440 > th dose dependent sin 0 NA
641 1289.87 radiation 1 1440 > th dose dependent no NA NA
642 1289.87 radiation 1 1440 > th dose dependent rect. 4 15
710 1290.22 radiation 30 1440 < th dose dependent rect. 13 23
713 1290.41 radiation 1 1440 > th dose dependent rect. 13 23
926 1293.80 radiation 1 1440 > th dose dependent rect. 5 9
951 1293.95 radiation 30 1440 < th dose dependent rect. 6 8