Os01g0895500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhomboid-like protein family protein.
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Os01g0895500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhomboid-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.77 | 0.192 | 9.55 | 0.231 | 0.345 | 0.672 | -0.101 | 1.51 | 0.163 | 2.59 | 1.642 | 5806 | -- | -- |
| 17.76 | 0.196 | 9.51 | 0.453 | 0.33 | 0.464 | -0.141 | -- | 0.275 | 2.51 | 20.01 | 8890 | -- | -- |
| 16.7 | 0.19 | 9.55 | 0.248 | 0.337 | 0.66 | -- | 1.38 | 0.162 | 2.49 | 1.843 | 5806 | -- | -- |
| 17.77 | 0.196 | 9.51 | 0.457 | 0.337 | 0.468 | -- | -- | 0.275 | 2.44 | 20 | 8890 | -- | -- |
| 22.51 | 0.221 | 9.51 | 0.254 | -- | 0.587 | -- | 1.1 | 0.238 | -- | 15.64 | 9113 | -- | -- |
| 26.07 | 0.239 | 9.55 | 0.448 | 0.345 | -- | -0.107 | -- | 0.0897 | 2.38 | -- | -- | -- | -- |
| 26.12 | 0.239 | 9.55 | 0.451 | 0.344 | -- | -- | -- | 0.0904 | 2.39 | -- | -- | -- | -- |
| 23.56 | 0.226 | 9.52 | 0.411 | -- | 0.496 | -- | -- | 0.235 | -- | 11.08 | 9075 | -- | -- |
| 22.78 | 0.222 | 9.52 | -- | 0.347 | 0.502 | -- | -- | 0.235 | 2.17 | 32.81 | 9203 | -- | -- |
| 33.13 | 0.269 | 9.55 | 0.465 | -- | -- | -- | -- | 0.0988 | -- | -- | -- | -- | -- |
| 31.47 | 0.262 | 9.56 | -- | 0.353 | -- | -- | -- | 0.0401 | 2.41 | -- | -- | -- | -- |
| 26.27 | 0.239 | 9.53 | -- | -- | 0.537 | -- | -- | 0.224 | -- | 3.82 | 9036 | -- | -- |
| 38.85 | 0.291 | 9.56 | -- | -- | -- | -- | -- | 0.0472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 2 | 14.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 3 | 14.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 7 | 14.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 8 |
| 10 | 14.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 13 | 14.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 13 |
| 15 | 14.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 16 | 14.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 17 | 14.91 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 18 | 14.91 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 28 | 14.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 32 | 14.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 79 | 15.14 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 22 | NA |
| 82 | 15.17 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 116 | 15.25 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 122 | 15.27 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 138 | 15.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 20 |
| 145 | 15.33 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 176 | 15.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 13 |
| 197 | 15.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 209 | 15.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 11 |
| 213 | 15.42 | temperature | 25.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 215 | 15.42 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 226 | 15.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 232 | 15.43 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 269 | 15.45 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 273 | 15.46 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 312 | 15.46 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 12 |
| 317 | 15.46 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 16 | 19 |
| 329 | 15.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 342 | 15.48 | temperature | 30.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 346 | 15.48 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 363 | 15.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 376 | 15.48 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 389 | 15.49 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 390 | 15.49 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 415 | 15.49 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 438 | 15.49 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 16 |
| 445 | 15.50 | temperature | 30.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 483 | 15.51 | temperature | 25.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 531 | 15.51 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 608 | 15.53 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 661 | 15.54 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 709 | 15.55 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 765 | 15.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 22 |
| 771 | 15.56 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 852 | 15.56 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 876 | 15.56 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 910 | 15.57 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 927 | 15.57 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 946 | 15.58 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |