BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0895500 Os01g0895500|AK063649
         (273 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59520.1  | chr3:21992054-21992863 FORWARD LENGTH=270          372   e-104
AT3G17611.1  | chr3:6024946-6026173 FORWARD LENGTH=335             54   1e-07
AT3G58460.2  | chr3:21623374-21626642 REVERSE LENGTH=427           53   2e-07

>AT3G59520.1 | chr3:21992054-21992863 FORWARD LENGTH=270
          Length = 269

 Score =  372 bits (956), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/269 (66%), Positives = 216/269 (80%), Gaps = 3/269 (1%)

Query: 1   MGKPLIYEILEKPASSSVIGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAF 60
           MG+PL Y+I+EKPA+S ++ +CS+IWF IQK++IGY  VGLSYE A+EG  YWR+ITSA 
Sbjct: 1   MGRPLFYDIIEKPATSCIVTLCSVIWFVIQKKSIGYSQVGLSYETAIEG-HYWRMITSAL 59

Query: 61  SHISVVHLVFNMSALWSLGVVEQLGQIGLGXXXXXXXXXXXXXXXXXXXXXFYHVMIQKF 120
           SHISV+HLVFNMSALWSLGVVEQLG +GLG                      YH++I +F
Sbjct: 60  SHISVLHLVFNMSALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARF 119

Query: 121 KVEYFRRVTAVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQ 180
           K++YFRRVTAVGYSCVVFGWMTIL+ KQPSSKLN+FG+LSLPISFAPFESLIFTSI+VPQ
Sbjct: 120 KIDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLNLFGLLSLPISFAPFESLIFTSIIVPQ 179

Query: 181 ASFIGHLSGIIVGYSIAWGLVHGMNNYWAITMFGWIVLVFVLSLKRTGSMDLRFIEIEPV 240
           ASF+GHLSGI+VGY+I+WGL+ GMNNYWA+TM GWIV+VFV SLK++G+ D  F+EIE +
Sbjct: 180 ASFLGHLSGILVGYAISWGLIGGMNNYWALTMLGWIVVVFVFSLKKSGAYDFSFLEIESL 239

Query: 241 TDPSLPSVGVVASRNGRTLQMDVLPRRGV 269
           TD SLPSV  +   NGRTLQ   +P  GV
Sbjct: 240 TDASLPSVRFIG--NGRTLQASAVPLSGV 266



>AT3G17611.1 | chr3:6024946-6026173 FORWARD LENGTH=335
          Length = 334

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 54  RIITSAFSHISVVHLVFNMSALWSLGVVEQLGQIGLGXXXXXXXXXXXXXXXXXXXXXFY 113
           R+  SAF H++  HLV+NM +L   G+  +   +G                         
Sbjct: 78  RLFLSAFYHVNEPHLVYNMMSLLWKGIKLET-SMGSSEFASMVFTLIGMSQGVTLLLAKS 136

Query: 114 HVMIQKFKVEYFRRVTAVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIF 173
            +++  +   Y+    AVG+S V+F  M ++   Q     +++G+L +P  +A +  LI 
Sbjct: 137 LLLLFDYDRAYYNEY-AVGFSGVLFA-MKVVLNSQAEDYSSVYGIL-VPTKYAAWAELIL 193

Query: 174 TSIMVPQASFIGHLSGIIVG 193
             + VP ASF+GHL GI+ G
Sbjct: 194 VQMFVPNASFLGHLGGILAG 213



>AT3G58460.2 | chr3:21623374-21626642 REVERSE LENGTH=427
          Length = 426

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 10/193 (5%)

Query: 15  SSSVIGICSLIWFFIQKRNIGYG---DVGLSYEAAMEGGQYWRIITSAFSHISVVHLVFN 71
           +SSV+ +C +I+        GY    +V     A +   Q +R  T+   H S++H++FN
Sbjct: 49  TSSVVVVCGVIYLICLL--TGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLHVLFN 106

Query: 72  MSALWSLGVVEQ--LGQIGLGXXXXXXXXXXXXXXXXXXXXXFYHVMIQKFKVEYFRRVT 129
           M AL  +G   +  +G + L                       Y+     ++ ++     
Sbjct: 107 MMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPF---YQYDHLMNEC 163

Query: 130 AVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSG 189
           A+G+S ++F  + I  +    +  ++FG+ ++P    P+  LI   +++   S +GHL G
Sbjct: 164 AIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGHLCG 223

Query: 190 IIVGYSIAWGLVH 202
           I+ G+S ++GL +
Sbjct: 224 ILSGFSYSYGLFN 236



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,392,131
Number of extensions: 202984
Number of successful extensions: 562
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 3
Length of query: 273
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 176
Effective length of database: 8,447,217
Effective search space: 1486710192
Effective search space used: 1486710192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)