Os01g0894700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0894700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.14 | 0.453 | 12.8 | -2.7 | 1.42 | 0.839 | 0.964 | -0.76 | -0.807 | 1.59 | 24.8 | 637 | -- | -- |
| 94.34 | 0.452 | 12.8 | -2.47 | 1.44 | 0.803 | 0.93 | -- | -0.749 | 1.55 | 24.7 | 634 | -- | -- |
| 96.64 | 0.458 | 12.8 | -2.68 | 1.43 | 0.798 | -- | -0.596 | -0.785 | 1.43 | 24.7 | 629 | -- | -- |
| 95.61 | 0.455 | 12.8 | -2.5 | 1.51 | 0.677 | -- | -- | -0.704 | 1.03 | 24.1 | 506 | -- | -- |
| 182.04 | 0.628 | 12.8 | -2.85 | -- | 1.65 | -- | -0.719 | -1 | -- | 25.51 | 978 | -- | -- |
| 118.02 | 0.509 | 12.7 | -2.22 | 1.57 | -- | 0.661 | -- | -0.414 | 0.661 | -- | -- | -- | -- |
| 119.85 | 0.513 | 12.7 | -2.24 | 1.57 | -- | -- | -- | -0.417 | 0.597 | -- | -- | -- | -- |
| 183.87 | 0.632 | 12.8 | -2.66 | -- | 1.59 | -- | -- | -0.948 | -- | 25.54 | 978 | -- | -- |
| 249.72 | 0.736 | 12.7 | -- | 1.49 | 0.262 | -- | -- | -0.262 | 0.836 | 24.94 | 603 | -- | -- |
| 274.09 | 0.774 | 12.7 | -2.19 | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
| 252.44 | 0.743 | 12.6 | -- | 1.53 | -- | -- | -- | -0.167 | 0.526 | -- | -- | -- | -- |
| 359.33 | 0.883 | 12.7 | -- | -- | 0.937 | -- | -- | -0.381 | -- | 25.57 | 916 | -- | -- |
| 400.35 | 0.934 | 12.6 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.92 | temperature | 10.0 | 10 | > th | dose dependent | sin | 13 | NA |
| 4 | 91.31 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 5 | 91.34 | temperature | 10.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 10 | 91.61 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 14 | 91.89 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 15 | 91.89 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 17 | 91.95 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 17 |
| 23 | 91.99 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 20 |
| 31 | 92.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 33 | 92.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 73 | 92.70 | temperature | 30.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 83 | 92.84 | temperature | 25.0 | 720 | > th | dose independent | sin | 20 | NA |
| 84 | 92.85 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 22 |
| 140 | 93.31 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 22 |
| 143 | 93.32 | temperature | 25.0 | 720 | > th | dose independent | rect. | 2 | 22 |
| 150 | 93.36 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 15 |
| 160 | 93.40 | temperature | 25.0 | 720 | < th | dose independent | rect. | 9 | 22 |
| 179 | 93.51 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 193 | 93.57 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 15 |
| 211 | 93.65 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 272 | 93.91 | temperature | 25.0 | 720 | > th | dose independent | no | NA | NA |
| 273 | 93.91 | temperature | 25.0 | 720 | < th | dose independent | no | NA | NA |
| 300 | 94.05 | temperature | 25.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 313 | 94.09 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 326 | 94.15 | temperature | 25.0 | 10 | < th | dose dependent | sin | 15 | NA |
| 334 | 94.17 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 338 | 94.19 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 345 | 94.22 | temperature | 25.0 | 720 | < th | dose independent | rect. | 9 | 18 |
| 371 | 94.32 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 23 |
| 384 | 94.40 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 23 |
| 463 | 94.63 | temperature | 25.0 | 720 | < th | dose independent | rect. | 22 | 23 |
| 480 | 94.67 | temperature | 25.0 | 720 | < th | dose independent | sin | 17 | NA |
| 508 | 94.75 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 537 | 94.85 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 557 | 94.91 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 562 | 94.92 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 584 | 95.00 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 611 | 95.05 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 612 | 95.05 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 681 | 95.26 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 877 | 95.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 902 | 95.76 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 938 | 95.85 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 13 |