BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0894700 Os01g0894700|AK067623
         (229 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30695.1  | chr2:13079269-13081095 REVERSE LENGTH=200           91   4e-19

>AT2G30695.1 | chr2:13079269-13081095 REVERSE LENGTH=200
          Length = 199

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 68/106 (64%)

Query: 85  TSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSNIPSSILL 144
           T V +     + V V + G+ TQ VF+     +   A P+PGFR+ KGG+T NIP  +LL
Sbjct: 73  TKVETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLL 132

Query: 145 QMLGKSRVTKFVLQEILSITVGDFVKKENLKVNPEIKTTQSEEELE 190
           ++LG S+V K V++++++  + D+VK+E+LKV  E+   QS E+LE
Sbjct: 133 EILGYSKVYKQVIKKLINSAIEDYVKQEDLKVGKELTVVQSYEDLE 178



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,734,848
Number of extensions: 131039
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 134
Effective length of database: 8,502,049
Effective search space: 1139274566
Effective search space used: 1139274566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)