Os01g0894500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0894500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.88 | 0.234 | 12.9 | -0.149 | 0.265 | 0.22 | -0.212 | -1.84 | 0.0783 | 0.155 | 19.1 | 1787 | -- | -- |
| 26.99 | 0.242 | 12.8 | -0.0897 | 0.249 | 0.808 | -0.148 | -- | 0.111 | 0.171 | 16.68 | 5453 | -- | -- |
| 25.01 | 0.233 | 12.9 | -0.15 | 0.26 | 0.205 | -- | -1.77 | 0.0762 | 0.206 | 19.2 | 1897 | -- | -- |
| 26.69 | 0.241 | 12.8 | -0.0852 | 0.243 | 0.89 | -- | -- | 0.118 | 0.111 | 16.4 | 6765 | -- | -- |
| 28.78 | 0.25 | 12.9 | -0.186 | -- | 0.236 | -- | -1.67 | 0.0604 | -- | 19 | 2231 | -- | -- |
| 33.96 | 0.273 | 12.8 | 0.274 | 0.257 | -- | -0.176 | -- | 0.215 | 0.178 | -- | -- | -- | -- |
| 34.09 | 0.273 | 12.8 | 0.281 | 0.258 | -- | -- | -- | 0.216 | 0.181 | -- | -- | -- | -- |
| 30.44 | 0.257 | 12.8 | -0.0892 | -- | 0.92 | -- | -- | 0.116 | -- | 16.48 | 6759 | -- | -- |
| 26.84 | 0.241 | 12.8 | -- | 0.242 | 0.832 | -- | -- | 0.127 | 0.0765 | 16.4 | 6764 | -- | -- |
| 38.27 | 0.289 | 12.8 | 0.289 | -- | -- | -- | -- | 0.22 | -- | -- | -- | -- | -- |
| 36.17 | 0.281 | 12.8 | -- | 0.262 | -- | -- | -- | 0.184 | 0.24 | -- | -- | -- | -- |
| 30.6 | 0.258 | 12.8 | -- | -- | 0.858 | -- | -- | 0.129 | -- | 16.3 | 6760 | -- | -- |
| 40.47 | 0.297 | 12.8 | -- | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 4 | 25.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 10 | 25.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 12 | 25.36 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 18 | 25.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 26 | 25.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 36 | 25.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 39 | 25.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 57 | 25.56 | temperature | 20 | 1440 | < th | dose dependent | sin | 15 | NA |
| 58 | 25.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 72 | 25.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 79 | 25.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 94 | 25.61 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 101 | 25.62 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 21 |
| 142 | 25.67 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 22 |
| 185 | 25.71 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 20 |
| 222 | 25.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 223 | 25.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 237 | 25.75 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 321 | 25.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 330 | 25.82 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 336 | 25.82 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 337 | 25.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 21 |
| 436 | 25.86 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 468 | 25.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 476 | 25.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 497 | 25.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 521 | 25.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 533 | 25.91 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 545 | 25.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 563 | 25.92 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 575 | 25.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 577 | 25.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 638 | 25.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 707 | 25.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 745 | 25.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 748 | 25.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 14 |
| 815 | 25.99 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 894 | 26.02 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 929 | 26.03 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 932 | 26.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 935 | 26.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 966 | 26.04 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 997 | 26.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 17 |