BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0894500 Os01g0894500|AK103300
         (162 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05720.1  | chr1:1717677-1718849 REVERSE LENGTH=164            213   4e-56

>AT1G05720.1 | chr1:1717677-1718849 REVERSE LENGTH=164
          Length = 163

 Score =  213 bits (541), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 91/137 (66%), Positives = 120/137 (87%)

Query: 24  GAERFGARECEELGFTGLALCSDCNALAEFVKDQELVEDCRKCCTEDSDDSISKLTFSGA 83
             E+   +ECE+LGF+GLALCSDC++L+E+VKDQELV DC KCC +DS+DS+SK+T+SGA
Sbjct: 26  AKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDCLKCCADDSEDSMSKVTYSGA 85

Query: 84  IIEVCMRKLVFYPEIVGFLEEDKDDFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWK 143
           I+EVCMRKLVFYPEIVGF+EE+K+ FP V+ +Y++ SPPKLIMLD+ G+ KE+IRIDNWK
Sbjct: 86  ILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPKLIMLDEDGEHKESIRIDNWK 145

Query: 144 REHIRQFLKEKVKPVKS 160
           REH+ Q+++EKVKP  +
Sbjct: 146 REHLLQYMREKVKPTAA 162



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,498,006
Number of extensions: 149847
Number of successful extensions: 315
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 71
Effective length of database: 8,611,713
Effective search space: 611431623
Effective search space used: 611431623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)