Os01g0889800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhodanese-like domain containing protein.
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Os01g0889800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhodanese-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.75 | 0.381 | 11.7 | -1.29 | 1.31 | 0.93 | 1 | 2.45 | -0.643 | 20.3 | 24.14 | 129 | -- | -- |
| 70.4 | 0.391 | 11.7 | -1.36 | 1.33 | 0.753 | 0.482 | -- | -0.639 | 20.6 | 6.746 | 165 | -- | -- |
| 68.42 | 0.385 | 11.7 | -1.32 | 1.29 | 0.86 | -- | 2.01 | -0.631 | 20.2 | 24.37 | 140 | -- | -- |
| 71.04 | 0.393 | 11.7 | -1.32 | 1.33 | 0.762 | -- | -- | -0.643 | 20.7 | 4.443 | 170 | -- | -- |
| 97.53 | 0.46 | 11.7 | -1.29 | -- | 1.38 | -- | 2.04 | -0.726 | -- | 2.567e-07 | 859 | -- | -- |
| 78.57 | 0.416 | 11.7 | -1.29 | 1.26 | -- | 0.655 | -- | -0.601 | 19.5 | -- | -- | -- | -- |
| 79.75 | 0.418 | 11.7 | -1.31 | 1.26 | -- | -- | -- | -0.6 | 19.5 | -- | -- | -- | -- |
| 96.91 | 0.458 | 11.7 | -1.42 | -- | 1.37 | -- | -- | -0.77 | -- | -41.22 | 851 | -- | -- |
| 116.88 | 0.504 | 11.7 | -- | 1.34 | 0.739 | -- | -- | -0.492 | 20.6 | 4.279 | 157 | -- | -- |
| 164.91 | 0.6 | 11.6 | -1.33 | -- | -- | -- | -- | -0.62 | -- | -- | -- | -- | -- |
| 124.79 | 0.523 | 11.6 | -- | 1.27 | -- | -- | -- | -0.454 | 19.4 | -- | -- | -- | -- |
| 149.8 | 0.57 | 11.6 | -- | -- | 1.3 | -- | -- | -0.605 | -- | -4.027 | 837 | -- | -- |
| 211.35 | 0.679 | 11.6 | -- | -- | -- | -- | -- | -0.473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.16 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 17 |
| 8 | 60.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 15 | 61.68 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 16 | 61.76 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 18 | 61.88 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 20 | 61.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 21 | 62.02 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 25 | 62.13 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 17 |
| 28 | 62.19 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 33 | 62.32 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 38 | 62.41 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 54 | 62.72 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 63 | 62.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 64 | 62.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 66 | 62.84 | radiation | 30.0 | 10 | < th | dose independent | rect. | 5 | 17 |
| 67 | 62.85 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 13 |
| 68 | 62.87 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 69 | 62.87 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 72 | 62.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 77 | 62.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 80 | 62.94 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 81 | 62.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 82 | 62.95 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 84 | 62.97 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 94 | 63.07 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 95 | 63.07 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 102 | 63.16 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 104 | 63.19 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 109 | 63.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 111 | 63.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 122 | 63.27 | humidity | 70.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 123 | 63.27 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 126 | 63.30 | wind | 5.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 133 | 63.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 135 | 63.33 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 136 | 63.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 138 | 63.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 139 | 63.33 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 142 | 63.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 155 | 63.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 9 |
| 158 | 63.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 161 | 63.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 162 | 63.43 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 168 | 63.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 196 | 63.66 | temperature | 15.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 226 | 63.78 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 228 | 63.80 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 234 | 63.81 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 235 | 63.81 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 239 | 63.83 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 261 | 63.93 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 283 | 64.01 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 286 | 64.02 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 292 | 64.05 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 295 | 64.06 | wind | 9.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 299 | 64.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 319 | 64.13 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 331 | 64.21 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 334 | 64.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 7 |
| 338 | 64.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 346 | 64.25 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 361 | 64.30 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 381 | 64.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 382 | 64.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 383 | 64.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 386 | 64.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 387 | 64.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 393 | 64.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 395 | 64.34 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 403 | 64.35 | radiation | 1.0 | 90 | > th | dose independent | sin | 10 | NA |
| 421 | 64.40 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 440 | 64.43 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 441 | 64.43 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 9 |
| 446 | 64.45 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 499 | 64.56 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 527 | 64.63 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 540 | 64.65 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 568 | 64.72 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 592 | 64.75 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 616 | 64.82 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 683 | 64.94 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 688 | 64.94 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 697 | 64.96 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 718 | 64.99 | radiation | 1.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 724 | 65.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 726 | 65.00 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 732 | 65.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 15 |
| 736 | 65.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 740 | 65.02 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 10 |
| 801 | 65.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 17 |
| 805 | 65.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 827 | 65.12 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 831 | 65.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 836 | 65.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 880 | 65.18 | radiation | 40.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 882 | 65.18 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 911 | 65.21 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 967 | 65.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 17 |