BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0889800 Os01g0889800|AK070087
         (361 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25480.1  | chr3:9235591-9236598 REVERSE LENGTH=265            191   4e-49
AT4G01050.1  | chr4:455874-458175 FORWARD LENGTH=467               99   3e-21

>AT3G25480.1 | chr3:9235591-9236598 REVERSE LENGTH=265
          Length = 264

 Score =  191 bits (486), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/192 (50%), Positives = 120/192 (62%)

Query: 103 AGGKVSLESIVVAIDDFNNRNPFFVAGAVFVWLVAIPLVQEYFKKYKAVSAIDAFRKLRD 162
           + GK+ LESI+V ID+F N+ PFFVAG  F +LV  P V  Y +KYK +SA++AFRKL++
Sbjct: 73  SSGKIDLESILVTIDNFFNKYPFFVAGCTFTYLVVYPAVMFYLRKYKPISAMNAFRKLKN 132

Query: 163 EPGAQLLDIRRGKSVRFMASPNLRLVEKSAXXXXXXXXXXXXXXXXXLARFPDPANTVVC 222
           E  +QLLDIR  K++  +ASPNL+ + KS+                    F D  NTVVC
Sbjct: 133 ESDSQLLDIRDVKTLALLASPNLKFLGKSSVQVPFSENDEEGFLTKVKGSFSDAENTVVC 192

Query: 223 VLDNFDGNSMKVAELLFNNGFKEAYAIKGGLRGPEGWQAIQEKYLPPSVHVVPRXXXXXX 282
           VLDNFDGNS KVAELL  NGFKEAY I+GG RG  GW AIQE+ LPP VH+         
Sbjct: 193 VLDNFDGNSSKVAELLIKNGFKEAYYIRGGARGKNGWLAIQEELLPPPVHMYTAKNVKSS 252

Query: 283 XXXXVSADGTDD 294
                S  GT++
Sbjct: 253 NNNEASVVGTEN 264



>AT4G01050.1 | chr4:455874-458175 FORWARD LENGTH=467
          Length = 466

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 110 ESIVVAIDDFNNRNPFFVAGAVFVWLVAIPLVQEYFKKYKA---VSAIDAFRKLRDEPGA 166
           + ++  I +F   NP  +AG V    V   L Q   KK K+    SA +A+ KL  +  A
Sbjct: 89  DGLIEGISNFVTDNPLVIAGGVAALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNA 148

Query: 167 QLLDIRRGKSVRFMASPNLRLVEKSAXXXXXXXXXXXXXXXXXLARFPDPANTVVCVLDN 226
           QLLDIR     R + SPN++ + K A                   +F DP NT + +LD 
Sbjct: 149 QLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDK 208

Query: 227 FDGNSMKVAELLFNNGFKEAYAIKGGLRGPEGW 259
           FDGNS  VAEL+  NGFK AYAIK G  GP GW
Sbjct: 209 FDGNSELVAELVALNGFKSAYAIKDGAEGPRGW 241



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,939,446
Number of extensions: 204415
Number of successful extensions: 493
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,364,969
Effective search space: 2183256909
Effective search space used: 2183256909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)