Os01g0889200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase III RPC4 family protein.
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Os01g0889200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase III RPC4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.54 | 0.317 | 11.2 | -1.61 | 0.713 | 0.745 | 0.77 | 0.347 | 0.15 | 4.41 | 21.5 | 1404 | -- | -- |
| 45.72 | 0.315 | 11.2 | -1.7 | 0.72 | 0.715 | 0.8 | -- | 0.116 | 4.38 | 21.7 | 1496 | -- | -- |
| 46.97 | 0.319 | 11.2 | -1.58 | 0.711 | 0.715 | -- | 0.362 | 0.147 | 4.58 | 21.72 | 1384 | -- | -- |
| 47.26 | 0.32 | 11.2 | -1.7 | 0.721 | 0.702 | -- | -- | 0.131 | 4.56 | 21.8 | 1445 | -- | -- |
| 73.45 | 0.399 | 11.2 | -1.54 | -- | 0.73 | -- | 0.382 | 0.148 | -- | 22 | 1217 | -- | -- |
| 61.41 | 0.367 | 11.2 | -1.41 | 0.738 | -- | 0.732 | -- | 0.34 | 4.35 | -- | -- | -- | -- |
| 62.82 | 0.371 | 11.2 | -1.41 | 0.746 | -- | -- | -- | 0.336 | 4.51 | -- | -- | -- | -- |
| 73.88 | 0.4 | 11.2 | -1.64 | -- | 0.71 | -- | -- | 0.125 | -- | 22.08 | 1234 | -- | -- |
| 113.44 | 0.499 | 11.1 | -- | 0.756 | 0.191 | -- | -- | 0.448 | 4.28 | 21.8 | 1445 | -- | -- |
| 92.55 | 0.45 | 11.2 | -1.38 | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
| 115.47 | 0.503 | 11.1 | -- | 0.72 | -- | -- | -- | 0.493 | 4.56 | -- | -- | -- | -- |
| 138.03 | 0.547 | 11.2 | -- | -- | 0.332 | -- | -- | 0.403 | -- | 22.4 | 1074 | -- | -- |
| 143.12 | 0.558 | 11.1 | -- | -- | -- | -- | -- | 0.509 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 2 | 47.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 15 | 47.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 19 | 47.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 30 | 47.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 51 | 47.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 91 | 47.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 138 | 47.73 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 148 | 47.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 171 | 47.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 204 | 47.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 218 | 47.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 247 | 47.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 261 | 47.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 271 | 47.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 427 | 48.13 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 561 | 48.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 962 | 49.18 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 994 | 49.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |