BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0889200 Os01g0889200|AK066619
         (198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09380.1  | chr5:2911313-2913136 REVERSE LENGTH=273            112   9e-26
AT4G25180.1  | chr4:12911746-12913907 REVERSE LENGTH=312           99   1e-21

>AT5G09380.1 | chr5:2911313-2913136 REVERSE LENGTH=273
          Length = 272

 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 94/143 (65%), Gaps = 3/143 (2%)

Query: 51  VELEEIRPSSTECESSIHPAEELNLLEQGDTRRMLLFQLPKSLPLPRI-SAAVERNGKAR 109
           +++EE   +    E S++ A  L L+E    ++M   +LP S+PL    +  +E     +
Sbjct: 126 LDVEEFMQAGGHHEDSLNTAANLGLMEDSGEQKMFFMRLP-SVPLASTPTENLETRPNIK 184

Query: 110 DKEVKEGSNLKELPQGYLGKMVVYKSGKIKMKLGDVMFDVNPGEECRMAQHVAAINTKEK 169
               K+  +LK LP+GY+GK++VYKSG +KMKLG+V++DV+PG +   AQ V  +NT++K
Sbjct: 185 GPVEKKTVDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQK 244

Query: 170 HCCLLGEIESRHVVVTPDVDSLL 192
           +CCL+G++  +H V+TPD+DS+L
Sbjct: 245 NCCLVGDV-YKHAVLTPDIDSIL 266



>AT4G25180.1 | chr4:12911746-12913907 REVERSE LENGTH=312
          Length = 311

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 81/130 (62%), Gaps = 2/130 (1%)

Query: 64  ESSIHPAEELNLLE-QGDTRRMLLFQLPKSLPLPRISAAVERNGKARDKEVKEGSNLKEL 122
           E++I+ AEEL L   Q   ++M +F++P  LP+ + +         R+      +  + L
Sbjct: 173 ENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKRSVREYSSGISNPFEGL 232

Query: 123 PQGYLGKMVVYKSGKIKMKLGDVMFDVNPGEECRMAQHVAAINTKEKHCCLLGEIESRHV 182
           P+G++GKM+VYKSG +K+K+GD +FDV+PG   ++   V AI+ K ++C  +G   ++ V
Sbjct: 233 PEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGS-SAKFV 291

Query: 183 VVTPDVDSLL 192
            VTPDV+SLL
Sbjct: 292 TVTPDVESLL 301



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,172,498
Number of extensions: 159581
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)