Os01g0883100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PISTILLATA-like MADS box protein.
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Os01g0883100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PISTILLATA-like MADS box protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.16 | 0.54 | 4.66 | 1.46 | 0.347 | -1.76 | 2.38 | 5.43 | -0.0473 | 21.6 | 18.04 | 3964 | -- | -- |
| 158.65 | 0.587 | 4.77 | 1.04 | 0.262 | -2.2 | 2.59 | -- | 0.0134 | 22.3 | 12.31 | 21392 | -- | -- |
| 147.86 | 0.566 | 4.65 | 1.35 | 0.506 | -1.83 | -- | 5.72 | 0.0168 | 20.2 | 17.3 | 2357 | -- | -- |
| 180.1 | 0.625 | 4.78 | 0.85 | 0.411 | -2.13 | -- | -- | -0.0201 | 19 | 7.954 | 20798 | -- | -- |
| 158.52 | 0.586 | 4.66 | 1.45 | -- | -1.73 | -- | 5.95 | -0.0105 | -- | 17.1 | 2539 | -- | -- |
| 226.47 | 0.706 | 4.95 | -0.765 | 0.226 | -- | 2.49 | -- | -0.812 | 21.9 | -- | -- | -- | -- |
| 245.4 | 0.734 | 4.96 | -0.849 | 0.388 | -- | -- | -- | -0.809 | 18.4 | -- | -- | -- | -- |
| 187.9 | 0.638 | 4.77 | 0.87 | -- | -2.12 | -- | -- | -0.0307 | -- | 8.6 | 21505 | -- | -- |
| 176.76 | 0.619 | 4.84 | -- | 0.392 | -1.96 | -- | -- | -0.248 | 19.1 | 10.6 | 9099 | -- | -- |
| 253.24 | 0.744 | 4.95 | -0.859 | -- | -- | -- | -- | -0.817 | -- | -- | -- | -- | -- |
| 264.4 | 0.761 | 4.94 | -- | 0.4 | -- | -- | -- | -0.714 | 18.3 | -- | -- | -- | -- |
| 183.31 | 0.631 | 4.82 | -- | -- | -1.93 | -- | -- | -0.261 | -- | 8.282 | 8620 | -- | -- |
| 272.7 | 0.771 | 4.93 | -- | -- | -- | -- | -- | -0.721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.43 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 5 | 123.58 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 255 | 127.56 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 260 | 127.72 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 10 | NA |
| 314 | 128.36 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 320 | 128.45 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 333 | 128.63 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 19 |
| 352 | 128.90 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 391 | 129.40 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 398 | 129.47 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 423 | 129.61 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 428 | 129.67 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 438 | 129.76 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 456 | 129.88 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 467 | 129.98 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 516 | 130.28 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 528 | 130.38 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 541 | 130.50 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 548 | 130.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 564 | 130.73 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 567 | 130.75 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 572 | 130.84 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 608 | 131.00 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 631 | 131.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 632 | 131.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 635 | 131.26 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 4 |
| 651 | 131.39 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 656 | 131.42 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 659 | 131.47 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 666 | 131.50 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 677 | 131.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 678 | 131.56 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 683 | 131.58 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 700 | 131.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 722 | 131.75 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 723 | 131.75 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 744 | 131.76 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 838 | 132.04 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 842 | 132.05 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 871 | 132.11 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 879 | 132.15 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 898 | 132.22 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 909 | 132.26 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 956 | 132.42 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 986 | 132.51 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 7 |